View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20464_low_27 (Length: 362)

Name: NF20464_low_27
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20464_low_27
NF20464_low_27
[»] chr1 (2 HSPs)
chr1 (138-283)||(22020352-22020490)
chr1 (38-79)||(22020266-22020307)
[»] chr8 (4 HSPs)
chr8 (101-344)||(13820131-13820372)
chr8 (9-79)||(13820419-13820488)
chr8 (192-291)||(11803867-11803962)
chr8 (178-232)||(3662067-3662121)
[»] chr3 (1 HSPs)
chr3 (197-295)||(25120442-25120540)
[»] chr6 (3 HSPs)
chr6 (191-288)||(8802908-8803005)
chr6 (195-228)||(7089502-7089535)
chr6 (101-129)||(14939680-14939708)
[»] chr4 (2 HSPs)
chr4 (197-243)||(1949501-1949547)
chr4 (178-230)||(5664308-5664360)


Alignment Details
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 283
Target Start/End: Original strand, 22020352 - 22020490
Alignment:
Q  138 atttttggtgtatcaaaacttttttatggtattttgtctattgtccaacttgcgagcacatgattgtgtgagctctctgcaacccttcatagaagctcga 237  Q
    ||||||||||||||||||||||| || ||| ||||||       |||||||||||||||||||||||||| |||||||||| ||||||||||||| | |     
T  22020352 atttttggtgtatcaaaacttttgtaaggtcttttgt-------ccaacttgcgagcacatgattgtgtgggctctctgcagcccttcatagaagatggg 22020444  T
Q  238 tagagttttacttgctttgatgctgggttcggatctttatcaataa 283  Q
    |||||| || ||||||||||||||||||| ||| ||||||||||||    
T  22020445 tagagtcttgcttgctttgatgctgggtttggacctttatcaataa 22020490  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 22020266 - 22020307
Alignment:
Q  38 catagggtagtcacttagaattttgctatctgtaatttatca 79  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  22020266 catagggtagtcaattagaattttgctatcggtaatttatca 22020307  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 101 - 344
Target Start/End: Complemental strand, 13820372 - 13820131
Alignment:
Q  101 tatcttgttggctaagtgtagcctttaggacgatgacatttttggtgtatcaaaacttttttatggtattttgtctattgtccaacttgcgagcacatga 200  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||  ||| |||| ||||       ||||||||||| | |||||||||    
T  13820372 tatcttgttggctaagtgtagcctttaggactgtgacaattttggtgtatcaaaatatttgtatgatatt-------ttgtccaacttacaagcacatga 13820280  T
Q  201 ttgtgtgagctctctgcaacccttca-tagaagctcgatagagttttacttgctttgatgctgggttcggatctttatcaataatattttaattat---- 295  Q
    || |||||||||||| ||||||||||  | |||   | ||||||||| ||||||||||||||  ||| | | |||||||||||| ||||||| |||        
T  13820279 ttctgtgagctctctacaacccttcacaaaaaggcgggtagagttttgcttgctttgatgctaagtttgaacctttatcaataaaattttaactatcgaa 13820180  T
Q  296 -nnnnnnnntatacagatccttagtctttctctacataaaatgaactaaa 344  Q
             ||||||| |||||||||||||||||||||||||||||||||    
T  13820179 aaaaatatatatacag-tccttagtctttctctacataaaatgaactaaa 13820131  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 13820488 - 13820419
Alignment:
Q  9 tcatttctaacaggttctaccatgtgtgccatagggtagtcacttagaattttgctatctgtaatttatca 79  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  13820488 tcatttctaacaggttgtaccatgtgtgccatagggtagtcactt-gagttttgctatctgtaatttatca 13820419  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 291
Target Start/End: Complemental strand, 11803962 - 11803867
Alignment:
Q  192 agcacatgattgtgtgagctctctgcaacccttcatagaagctcgatagagttttacttgctttgatgctgggttcggatctttatcaataatattttaa 291  Q
    |||| ||||||||||| ||||||||||||| |||||||||| | | |||||||| |    |||||||| |||||||||| |||||| ||||| |||||||    
T  11803962 agcatatgattgtgtgggctctctgcaaccattcatagaaggtgggtagagtttca----ctttgatgttgggttcggacctttattaataaaattttaa 11803867  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 3662067 - 3662121
Alignment:
Q  178 ttgtccaacttgcgagcacatgattgtgtgagctctctgcaacccttcatagaag 232  Q
    ||||||||||||||| |||||| ||||||| ||||||||||| |||| |||||||    
T  3662067 ttgtccaacttgcgatcacatggttgtgtgggctctctgcaatcctttatagaag 3662121  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 25120442 - 25120540
Alignment:
Q  197 atgattgtgtgagctctctgcaacccttcatagaagctcgatagagttttacttgctttgatgctgggttcggatctttatcaataatattttaattat 295  Q
    ||||||||||| ||||||| |||||||||||||||| |   |||||||||  |||||||||||||||||||  |||||||||||||| |||||||||||    
T  25120442 atgattgtgtgggctctctacaacccttcatagaagatgagtagagttttgattgctttgatgctgggttcaaatctttatcaataaaattttaattat 25120540  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 288
Target Start/End: Complemental strand, 8803005 - 8802908
Alignment:
Q  191 gagcacatgattgtgtgagctctctgcaacccttcatagaagctcgatagagttttacttgctttgatgctgggttcggatctttatcaataatattt 288  Q
    ||||||||||||||||||||||||| |||||||||||||| | | |||| |||||  |||  ||||||||||| |||  | |||||||||||| ||||    
T  8803005 gagcacatgattgtgtgagctctctccaacccttcatagatggtggatacagtttcgcttattttgatgctggattcaaacctttatcaataaaattt 8802908  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 7089502 - 7089535
Alignment:
Q  195 acatgattgtgtgagctctctgcaacccttcata 228  Q
    ||||||||||||||||||||||||||||||||||    
T  7089502 acatgattgtgtgagctctctgcaacccttcata 7089535  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 14939680 - 14939708
Alignment:
Q  101 tatcttgttggctaagtgtagcctttagg 129  Q
    |||||||||||||||||||||||||||||    
T  14939680 tatcttgttggctaagtgtagcctttagg 14939708  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 1949547 - 1949501
Alignment:
Q  197 atgattgtgtgagctctctgcaacccttcatagaagctcgatagagt 243  Q
    ||||| ||||||| |||||||||||||||||||||| | ||||||||    
T  1949547 atgatagtgtgagttctctgcaacccttcatagaaggtggatagagt 1949501  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 5664360 - 5664308
Alignment:
Q  178 ttgtccaacttgcgagcacatgattgtgtgagctctctgcaacccttcataga 230  Q
    |||||| |||| | ||||||||||||||||||  |||||||||| ||||||||    
T  5664360 ttgtccgactttctagcacatgattgtgtgagtcctctgcaacctttcataga 5664308  T

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