View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20464_low_3 (Length: 712)

Name: NF20464_low_3
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20464_low_3
NF20464_low_3
[»] chr4 (1 HSPs)
chr4 (1-694)||(27692255-27692948)
[»] chr1 (28 HSPs)
chr1 (232-327)||(8956225-8956320)
chr1 (28-172)||(9464469-9464613)
chr1 (28-166)||(8921053-8921191)
chr1 (265-327)||(8942219-8942281)
chr1 (290-344)||(11028478-11028532)
chr1 (218-327)||(8932303-8932412)
chr1 (28-168)||(8942372-8942512)
chr1 (28-168)||(8964867-8965007)
chr1 (28-164)||(9488909-9489045)
chr1 (290-344)||(11011075-11011129)
chr1 (218-327)||(8920898-8921007)
chr1 (28-89)||(9233674-9233735)
chr1 (469-526)||(10901592-10901649)
chr1 (265-329)||(9233905-9233969)
chr1 (290-326)||(10903629-10903665)
chr1 (48-155)||(8873703-8873810)
chr1 (28-166)||(8932458-8932596)
chr1 (29-107)||(8956439-8956517)
chr1 (262-332)||(9320099-9320169)
chr1 (262-332)||(9350416-9350486)
chr1 (290-344)||(10914774-10914828)
chr1 (290-344)||(10979509-10979563)
chr1 (290-344)||(11004893-11004947)
chr1 (473-519)||(11007738-11007784)
chr1 (322-359)||(9056731-9056768)
chr1 (290-359)||(9142742-9142811)
chr1 (473-518)||(9488561-9488606)
chr1 (290-335)||(11033375-11033420)
[»] chr3 (1 HSPs)
chr3 (265-332)||(9159789-9159856)


Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Complemental strand, 27692948 - 27692255
Alignment:
Q  1 gttaaggtattgaataagtctcaaaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttg 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27692948 gttaaggtattgaccaagtctcaaaccaatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaacgtggtgcaactggttg 27692849  T
Q  101 gattttgtgccgaaagaacaaagcaagctctggtttacgagttcatgcctaatggttctcttgataaacacacgttttcacaagagcaaggacacttgtc 200  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  27692848 gattctgtgctgaaagaacaaagcaagctctggtttacgagttcatgcctaatggttctcttgataaacacatgttttcacatgagcaaggacacttgtc 27692749  T
Q  201 gtcgttaagctatgagaaaatttacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgat 300  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692748 gtcgttaagctacgagaaaatctacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgat 27692649  T
Q  301 ataaaacctcataacattcttcttgacgagaattttgatccaaagatatctgactttggtttggcgaagttgtaccgaacagatcaaagtattttaactt 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692648 ataaaacctcataacattcttcttgacgagaattttgacccaaagatatctgactttggtttggcgaagttgtaccgaacagatcaaagtattttaactt 27692549  T
Q  401 taacagcggcaagaggagcaatgggacacatggctcctgcgttgttatacaagaacatcggaagcatctctcacaaagctgatgtttatagttttggaat 500  Q
    ||||||||||||||||| |||||||  |||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  27692548 taacagcggcaagaggaacaatggggtacatggctcctgagttgttatacaagaacattggaaacatctctcacaaagctgatgtttatagttttggaat 27692449  T
Q  501 gatgctaatggaaatggcaggtagaaaaaagaacaaaagttacatagagaattattggcaagactactttgctagatgggtttatgatcaatttgaggaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692448 gatgctaatggaaatggcaggtagaaaaaagaacaaaagttacatagagaattattggcaagactactttgctagatgggtttatgatcaatttgaggaa 27692349  T
Q  601 acaatagatacaaacaatggcacagaggaggaaaagaaaattgcaatgaagatgattgtgattgcgttgaaatgcatacaaatgaaaccagatg 694  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27692348 acaatagatacaaacaatggtacagaggaggaaaagaaaattgcaatgaagatgattgtgattgcgttgaaatgcatacaaatgaaaccagatg 27692255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 8956320 - 8956225
Alignment:
Q  232 tctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgac 327  Q
    ||||||||| || | |||||||||   || || |||||||||||||||||||||||  |||| |||||||| || |||||||||||||||||||||    
T  8956320 tctcttggagttgcacgtggaattgcttatttgcatcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacattcttcttgac 8956225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 9464613 - 9464469
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 127  Q
    |||||||| || ||||||||||||||||| ||||||||||  ||||  ||||| |||||||| || ||  |||| |||||||  || | ||||||   ||    
T  9464613 aatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9464514  T
Q  128 ctctggtttacgagttcatgcctaatggttctcttgataaacaca 172  Q
    | || ||||| |||||||||||||| | ||||||||| |||||||    
T  9464513 cacttgtttatgagttcatgcctaacgattctcttgaaaaacaca 9464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 8921191 - 8921053
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 127  Q
    ||||| ||||| ||||| ||||||||||||||||| |||| ||| | ||| |  |||||||||| ||| |||||||||||||  ||  || |||| |  |    
T  8921191 aatgggcaagatttcattaatgaagttgcaaccataggaaaaatacatcacgccaatgtggtgcgacttgttggattttgtgttgagggatcaaaacgtg 8921092  T
Q  128 ctctggtttacgagttcatgcctaatggttctcttgata 166  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8921091 ctcttgtttatgatttcatgccaaatggctctcttgata 8921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 8942281 - 8942219
Alignment:
Q  265 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgac 327  Q
    |||||||||||||||||||||||  |||| |||||||| || ||||||||||| |||||||||    
T  8942281 catcaaggttgtgacatgcaaattttacattttgatatcaagcctcataacatacttcttgac 8942219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 11028478 - 11028532
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 344  Q
    |||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||    
T  11028478 tacactttgatataaagcctcataacatccttcttgatgagaattttaatccaaa 11028532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 327
Target Start/End: Complemental strand, 8932412 - 8932303
Alignment:
Q  218 aaatttacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacat 317  Q
    |||| ||||| || ||||||||| || | |||||||||   || || |||||||||||||||||||||||  |||| || ||||| || |||||||||||    
T  8932412 aaatgtacgagatatctcttggagttgcacgtggaattgcttatttgcatcaaggttgtgacatgcaaattttacatttcgatatcaagcctcataacat 8932313  T
Q  318 tcttcttgac 327  Q
     |||||||||    
T  8932312 acttcttgac 8932303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 8942512 - 8942372
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 127  Q
    ||||| ||||| |||||||||||||||||||| || |||||||| | |||    |||||||||| |||  ||||||||||||  ||  || ||||   ||    
T  8942512 aatgggcaagatttcatcaatgaagttgcaacaataggaagaatacatcacaccaatgtggtgcgacttattggattttgtgttgagggatcaaaaagag 8942413  T
Q  128 ctctggtttacgagttcatgcctaatggttctcttgataaa 168  Q
    |||| ||||| || |||||||| ||||| ||||||||||||    
T  8942412 ctcttgtttatgatttcatgcccaatggctctcttgataaa 8942372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 8965007 - 8964867
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 127  Q
    ||||| || ||||| || |||||||| |||||||||||||| || | |||| |||||||||||||| |  |||| ||||||| |||  || |||| |  |    
T  8965007 aatgggcaggactttattaatgaagtagcaaccattggaaggatacatcatttgaatgtggtgcaattaattggtttttgtgtcgagggatcaaaccgtg 8964908  T
Q  128 ctctggtttacgagttcatgcctaatggttctcttgataaa 168  Q
    |||| ||||| || |||||| ||||||| || |||||||||    
T  8964907 ctcttgtttatgaattcatgtctaatggatcccttgataaa 8964867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 9489045 - 9488909
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 127  Q
    |||||||| || ||||||||||||||||| || |||||||  ||||  ||||| || ||||| || ||  |||| |||||||  || | ||||||   ||    
T  9489045 aatggacaggaattcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttgtgttgagaaaacaaaaagag 9488946  T
Q  128 ctctggtttacgagttcatgcctaatggttctcttga 164  Q
    | || ||||| ||||||||||||||||||||||||||    
T  9488945 cacttgtttatgagttcatgcctaatggttctcttga 9488909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 11011129 - 11011075
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 344  Q
    |||||||||||||||| |||||||||||||||||||| || |||||  |||||||    
T  11011129 tacactttgatataaagcctcataacattcttcttgatgaaaatttcaatccaaa 11011075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 327
Target Start/End: Complemental strand, 8921007 - 8920898
Alignment:
Q  218 aaatttacgacatttctcttggaatttcccgtggaattcaatacttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacat 317  Q
    |||| ||||| || ||||||||| || | |||||||||   || || |||||||| ||||||||||||||  |||| ||||| || || |||||||||||    
T  8921007 aaatgtacgagatatctcttggagttgcacgtggaattgcttatttgcatcaaggctgtgacatgcaaattttacattttgacatcaagcctcataacat 8920908  T
Q  318 tcttcttgac 327  Q
     |||||||||    
T  8920907 acttcttgac 8920898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 9233674 - 9233735
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggt 89  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||||| ||||||||    
T  9233674 aatggacaagattttatcaacgaagttgcgaccattggaagaatacatcatgttaatgtggt 9233735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 526
Target Start/End: Complemental strand, 10901649 - 10901592
Alignment:
Q  469 tctcacaaagctgatgtttatagttttggaatgatgctaatggaaatggcaggtagaa 526  Q
    ||||||||||||||||| ||||||||||||||| || | ||||| |||||| ||||||    
T  10901649 tctcacaaagctgatgtctatagttttggaatgttgttgatggagatggcaagtagaa 10901592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 9233905 - 9233969
Alignment:
Q  265 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacga 329  Q
    |||||||||||||| ||||||||  |||| |||||||| || |||||||| |||||||| |||||    
T  9233905 catcaaggttgtgatatgcaaattctacattttgatatcaagcctcataatattcttctagacga 9233969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 10903665 - 10903629
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttga 326  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10903665 tacactttgatataaagcctcataacattcttcttga 10903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 8873703 - 8873810
Alignment:
Q  48 tgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaagctctggtttacgagttcatg 147  Q
    |||||| ||||||||||| ||||| | |||| |||||||||||||| |  ||||||||||  ||||  || |||| |  ||||| ||||| ||||| |||    
T  8873703 tgaagtagcaaccattgggagaatacatcatttgaatgtggtgcaattaattggattttgcaccgagggatcaaaacgtgctcttgtttatgagtttatg 8873802  T
Q  148 cctaatgg 155  Q
    ||||||||    
T  8873803 cctaatgg 8873810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 8932596 - 8932458
Alignment:
Q  28 aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttgtgccgaaagaacaaagcaag 127  Q
    ||||||||||| ||||| | |||||||||||| || |||| ||| | |||    |||||||||| ||| |||||||||||||  || | | |||| |  |    
T  8932596 aatggacaagatttcattagtgaagttgcaactataggaaaaatacatcacaccaatgtggtgcgacttgttggattttgtgttgagaaatcaaaacgtg 8932497  T
Q  128 ctctggtttacgagttcatgcctaatggttctcttgata 166  Q
    |||| ||||| || |||||||| ||||| ||||||||||    
T  8932496 ctcttgtttatgatttcatgcccaatggctctcttgata 8932458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 8956517 - 8956439
Alignment:
Q  29 atggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaatgtggtgcaactggttggattttg 107  Q
    |||||||||| ||||| ||||||||||||||||| |||| ||| | |||    |||||||||| ||| |||||||||||    
T  8956517 atggacaagatttcattaatgaagttgcaaccataggaaaaatacatcacaccaatgtggtgcgacttgttggattttg 8956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 9320169 - 9320099
Alignment:
Q  262 ttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaa 332  Q
    ||||||||||| ||||||||||||||  | || |||||||| || || |||||||| |||||||| |||||    
T  9320169 ttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgagaa 9320099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 9350486 - 9350416
Alignment:
Q  262 ttacatcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaa 332  Q
    ||||||||||| ||||||||||||||  | || |||||||| || || |||||||| |||||||| |||||    
T  9350486 ttacatcaaggatgtgacatgcaaattttgcattttgatatcaagccccataacatccttcttgatgagaa 9350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 10914828 - 10914774
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 344  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||  |||||||    
T  10914828 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaa 10914774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 10979563 - 10979509
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 344  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||  |||||||    
T  10979563 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaa 10979509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 11004893 - 11004947
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaa 344  Q
    |||||||||||||||| ||||||||||| |||||||| || |||||  |||||||    
T  11004893 tacactttgatataaagcctcataacatccttcttgatgaaaatttcaatccaaa 11004947  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 519
Target Start/End: Complemental strand, 11007784 - 11007738
Alignment:
Q  473 acaaagctgatgtttatagttttggaatgatgctaatggaaatggca 519  Q
    ||||||||||||||||||||||||| ||| || ||||||| ||||||    
T  11007784 acaaagctgatgtttatagttttgggatgttgttaatggagatggca 11007738  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 9056768 - 9056731
Alignment:
Q  322 cttgacgagaattttgatccaaagatatctgactttgg 359  Q
    |||||||||||||||  |||||||||||||||||||||    
T  9056768 cttgacgagaattttattccaaagatatctgactttgg 9056731  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 9142742 - 9142811
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattttgatccaaagatatctgactttgg 359  Q
    |||| |||||||| || || ||||| ||||| ||||| ||||| |||  |||||||||||||||||||||    
T  9142742 tacattttgatatcaagccccataatattctgcttgatgagaactttattccaaagatatctgactttgg 9142811  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 518
Target Start/End: Complemental strand, 9488606 - 9488561
Alignment:
Q  473 acaaagctgatgtttatagttttggaatgatgctaatggaaatggc 518  Q
    ||||||| ||||||||||| ||||||||| || |||||||||||||    
T  9488606 acaaagcagatgtttatagctttggaatgttgttaatggaaatggc 9488561  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 11033420 - 11033375
Alignment:
Q  290 tacactttgatataaaacctcataacattcttcttgacgagaattt 335  Q
    |||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  11033420 tacactttgacataaagcctcataacatccttcttgatgagaattt 11033375  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 9159856 - 9159789
Alignment:
Q  265 catcaaggttgtgacatgcaaatcatacactttgatataaaacctcataacattcttcttgacgagaa 332  Q
    |||||||| ||||||||||||||| | || |||||||| || || |||||||| ||||||||||||||    
T  9159856 catcaaggatgtgacatgcaaatcttgcattttgatatcaagccccataacatacttcttgacgagaa 9159789  T

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