View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_30 (Length: 341)
Name: NF20464_low_30
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 44272601 - 44272935
Alignment:
| Q |
1 |
ttaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttttttgtgccttgtcaattaccctgtttggattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44272601 |
ttaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttttttgtgccttgtcaattaccctgtttggattct |
44272700 |
T |
|
| Q |
101 |
tggggcatttct--tagtgtttattgagatttgtggttccatgtgtattaccttcaacagcatacgtc--------gtaaatacactttgcccttttact |
190 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
44272701 |
tggggcatttcttatagtgtttattgagatttgtggttccatgtgtattaccttcagcagcatacgtcatattacagtaaatacactttgcccttttacc |
44272800 |
T |
|
| Q |
191 |
gtctggtacaaaatgatcccacgcacgagaacgtttacgagtttttccaacgtcacctgccgcttcaccttctaagtcatgatcagaatcaacatcaatt |
290 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44272801 |
gtctggtacaaaatgatcccaagcacgagaacgtttacgattttttccgacgtcacctgccgcttcaccttgtaagtcatgatcagaatcaacatcaatt |
44272900 |
T |
|
| Q |
291 |
ggattttcgacatcatttgtaggagcatcatcaac |
325 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||| |
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| T |
44272901 |
ggattttccacagcatttgtaggaacatcatcaac |
44272935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 1669878 - 1669544
Alignment:
| Q |
1 |
ttaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttttttgtgccttgtcaattaccctgtttggattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1669878 |
ttaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaagggttttttgtgccttgtcaattaccctgtttggattct |
1669779 |
T |
|
| Q |
101 |
tggggcatttct--tagtgtttattgagatttgtggttccatgtgtattaccttcaacagcatacgtc--------gtaaatacactttgcccttttact |
190 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
1669778 |
tggggcatttcttatagtgtttattgagatttgtggttccatgtgtattaccttcagcagcatacgtcatattacagtaaatacactttgcccttttacc |
1669679 |
T |
|
| Q |
191 |
gtctggtacaaaatgatcccacgcacgagaacgtttacgagtttttccaacgtcacctgccgcttcaccttctaagtcatgatcagaatcaacatcaatt |
290 |
Q |
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||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1669678 |
gtctggtacaaaatgatcccaagcacgagaacgcttacgattttttccgacgtcacctgccgcttcaccttgtaagtcatgatcagaatcaacatcaatt |
1669579 |
T |
|
| Q |
291 |
ggattttcgacatcatttgtaggagcatcatcaac |
325 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||| |
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| T |
1669578 |
ggattttccacagcatttgtaggaacatcatcaac |
1669544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 26073824 - 26074159
Alignment:
| Q |
1 |
ttaaattcaacaagcttaaaagagacattactatcaccctctacttgcttcccaagtacaaggg-ttttttgtgccttgtcaattaccctgtttggattc |
99 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26073824 |
ttaaattcaacaagtttaaaagagacattactatcaccctctacttgcttcccaagtacaagggtttttttgtgccttgtcaattaccctgtttggattc |
26073923 |
T |
|
| Q |
100 |
ttggggcatttct--tagtgtttattgagatttgtggttccatgtgtattaccttcaacagcatacgtc--------gtaaatacactttgcccttttac |
189 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
26073924 |
ttggggcatttcttatagtgtttattgagatttgtggttccatgtgtattaccttcagcagcatacgtcatattacagtaaatacactttgcccttttac |
26074023 |
T |
|
| Q |
190 |
tgtctggtacaaaatgatcccacgcacgagaacgtttacgagtttttccaacgtcacctgccgcttcaccttctaagtcatgatcagaatcaacatcaat |
289 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26074024 |
cgtctggtacaaaatgatcccaagcacgagaacgtttacgattttttccgacgtcacctgccgcttcaccttgtaagtcatgatcagaatcaacatcaat |
26074123 |
T |
|
| Q |
290 |
tggattttcgacatcatttgtaggagcatcatcaac |
325 |
Q |
| |
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||||||||| ||| ||||||||||| |||||||||| |
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| T |
26074124 |
tggattttccacagcatttgtaggaacatcatcaac |
26074159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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