View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_31 (Length: 338)
Name: NF20464_low_31
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_31 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 15858108 - 15857820
Alignment:
| Q |
40 |
attgttcttgcctctagcattgaaccctctaacttcttgtacagtgacttcaccgaaaaagctctcttctcttccaac-------accaaacatcttcct |
132 |
Q |
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| T |
15858108 |
attgttctcgcctctagcattgaaccctctaacttcttgtacaaagaattcaccgaaaaaactcccttctcttccaacttccaacaccaaacatcttcct |
15858009 |
T |
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| Q |
133 |
ctaaagaccccctaaagccatccaaatctacatacaactccctcaacaattcaatctcccaaacaaaaagaggacgtctccatgaaaacgaccaattaca |
232 |
Q |
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| T |
15858008 |
ctaaagaccccctaaagccatccaaattcgcatacaactcccttaacaaatcaatctcccaaacaaaaagaggacgtctccatgaaaacgaccaattaca |
15857909 |
T |
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| Q |
233 |
ctccggtgtattgagagtccctaagtcgcccaccaacgcctccttttgattggatagagagaaaagtgtaggatatttgatacgaaaag |
321 |
Q |
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| T |
15857908 |
ctccggtgtattgagagtccctaagtcgcccaccaacgcctccttttgattggatagagagaaaagtctaggatatttgattcgaaaag |
15857820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 1590712 - 1590840
Alignment:
| Q |
112 |
tccaacaccaaacatcttcctctaaagaccccctaaagccatccaaatctacatacaactccctcaacaattcaatctcccaaacaaaaagaggacgtct |
211 |
Q |
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| T |
1590712 |
tccaacaccaaaaatcttcctctacagtccctctaaaaccttccaaatccgcatacaactcccttaacaactcattctcccaaacaaaaagaggatgtct |
1590811 |
T |
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| Q |
212 |
ccatgaaaacgaccaattacactccggtg |
240 |
Q |
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| T |
1590812 |
ccaagtaaacgaccaattaaactccggtg |
1590840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 1611122 - 1611015
Alignment:
| Q |
119 |
ccaaacatcttcctctaaagaccccctaaagccatccaaatctacatacaactccctcaacaattcaatctcccaaacaaaaagaggacgtctccatgaa |
218 |
Q |
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| T |
1611122 |
ccaaacatcctcctctagagtccctctaaagccttccaactccaccaacgactcccttatcaaatcattctcccaaacaaaaagag--tgtctccaagaa |
1611025 |
T |
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| Q |
219 |
aacgaccaat |
228 |
Q |
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| T |
1611024 |
aacgaccaat |
1611015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 1983 - 1939
Alignment:
| Q |
187 |
tctcccaaacaaaaagaggacgtctccatgaaaacgaccaattac |
231 |
Q |
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| T |
1983 |
tctcccaaacaaaaagggggcgtctccatgaaaaccaccaattac |
1939 |
T |
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