View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_33 (Length: 323)
Name: NF20464_low_33
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 94 - 308
Target Start/End: Complemental strand, 22736601 - 22736387
Alignment:
| Q |
94 |
ctttgctaactcttgatgcttgcctcaattatgattattcagtagagacagagtccatggaggtgaatgtgttggaaaagaaagtgacacttacattcat |
193 |
Q |
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| T |
22736601 |
ctttgctaactcttgatgcttgcctcaattatgattattcagtagagacagagtccatggaagtgaatgtgttggaaaagaaagtgacacttacattcat |
22736502 |
T |
|
| Q |
194 |
attaccaactgtggctaaaggaatcactaggcaaattactcccatcagcaggaatcatctccctaaagttgccattaccaaacgtttatttcaatcttcc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22736501 |
attaccaactgtggctaaaggaatcactaggcaaattacccccatcagcaggaatcatctccctaaagttgccattaccaaacgtttatttcaatcttcc |
22736402 |
T |
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| Q |
294 |
cttcattagcaaagg |
308 |
Q |
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||||||||||||||| |
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| T |
22736401 |
cttcattagcaaagg |
22736387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 22736653 - 22736591
Alignment:
| Q |
18 |
gagaatttgatgttttgacaaaaaacatcaattaaattaaactgcttaataactttgctaact |
80 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
22736653 |
gagaatttgatgttttgacaaaaaacatcaattaaactaaattgcttaataactttgctaact |
22736591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 50201896 - 50201955
Alignment:
| Q |
131 |
ttcagtagagacagagtccatggaggtgaatgtgttggaaaagaaagtgacacttacatt |
190 |
Q |
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||||| |||||||||||| || | ||||||||| ||||||||||| |||| ||||||||| |
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| T |
50201896 |
ttcagcagagacagagtcaattgtggtgaatgtattggaaaagaaggtgatacttacatt |
50201955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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