View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20464_low_36 (Length: 305)
Name: NF20464_low_36
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_36 |
 | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
| [»] scaffold0549 (2 HSPs) |
| | |
|
| [»] scaffold1432 (1 HSPs) |
| | |
|
| [»] scaffold0557 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 37)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 23564415 - 23564665
Alignment:
| Q |
23 |
gaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcc |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23564415 |
gaaaacctgatcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcctgagtctgattcc |
23564514 |
T |
|
| Q |
123 |
cacacattataatgtttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatactt |
222 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23564515 |
caca--ttataatctttaaccaggctctgataccatgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtactcaagcatactt |
23564612 |
T |
|
| Q |
223 |
gcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactaca |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23564613 |
gcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactaca |
23564665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 23564331 - 23564414
Alignment:
| Q |
1 |
atacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccaca |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23564331 |
atacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccaca |
23564414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 288
Target Start/End: Original strand, 36165751 - 36166011
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccac |
125 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||||||||||| | |||| || ||||||||||||||||||||||| ||| ||| ||| | | |
|
|
| T |
36165751 |
aacctaagcaatgtgggactaacaacaaactacaaacaacttcaaaacaaccttcaacgcccaccctcacgcctagcgtgggtccgggtccaatttc--c |
36165848 |
T |
|
| Q |
126 |
acattataatgtttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgca |
225 |
Q |
| |
|
|||||| ||| |||||| |||| |||||||| |||||| |||||||||||||| |||||| ||||| ||||||||||||| ||||| ||| || | |
|
|
| T |
36165849 |
acattacaattcttaacccggctccgataccatattaaatgagtttggatctcatcgcaaaagttagcttaaaggatgagggtgctcaaacatgtttata |
36165948 |
T |
|
| Q |
226 |
cactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagacaacttcaaaa |
288 |
Q |
| |
|
||||||| | ||| | |||| | ||||| |||| || || |||||||| |||||||||||| |
|
|
| T |
36165949 |
cactcaacatcccgaaagcctgaataatgtgagactaaaaataaactacaaacaacttcaaaa |
36166011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 26 - 290
Target Start/End: Original strand, 36165318 - 36165584
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattc--cc |
123 |
Q |
| |
|
||||||||||||||| || || ||||||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||| |||| | |
|
|
| T |
36165318 |
aacctgagcaatgtgagagtaacaacaaactaaaaacaactttaaaatcaacttcaacacccaccctcacgcctagcgtgggcttgagtccaattctgtc |
36165417 |
T |
|
| Q |
124 |
acacattataatgtttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttg |
223 |
Q |
| |
|
|||||| ||| |||||| || | || ||||||| ||||| || |||||||||||||||||| ||||| |||| ||||||||||||||| ||| || |
|
|
| T |
36165418 |
ccacattgcaatccttaacctggttttgttaccatggtaaatgggcttggatctcatcccaaaatctagcacaaaagatgagggtactcaaacatcttta |
36165517 |
T |
|
| Q |
224 |
cacactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagacaacttcaaaact |
290 |
Q |
| |
|
|||||||| | |||||||||| |||||| ||| | |||||| |||| |||||||||||||| |
|
|
| T |
36165518 |
tacactcaacaacccgggaaccttagcaatgtgggactagaaacaaattacaaacaacttcaaaact |
36165584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 9928810 - 9929027
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaat----aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgccta |
100 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||| ||| ||||||||||| |
|
|
| T |
9928810 |
ttatacactcaacaacccggaaatctgagcaatgtgggataaattaataacaaactacaaacaacttcaaaactaacttcaacatccatcctcacgccta |
9928909 |
T |
|
| Q |
101 |
gcgtgggcccgagtctgattcccacacattataatgtttaaccaggctatgataccatgttaaataggtttgg-atctcatcccaaaagctagctcaaag |
199 |
Q |
| |
|
||| | |||||| ||||| | ||||| ||| ||||| | || ||||||||||||||||||| |||| |||| || ||||||| ||||||||| |
|
|
| T |
9928910 |
acgtatactcgagtccaattcc--ctcattacaatctttaaaccaactttgataccatgttaaataggcttggaatcttattccaaaagttagctcaaaa |
9929007 |
T |
|
| Q |
200 |
gatgagggtactcaagcata |
219 |
Q |
| |
|
||||||| ||||||| |||| |
|
|
| T |
9929008 |
gatgaggatactcaaacata |
9929027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 36165515 - 36165798
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgt |
104 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||| |||||||| || | ||||||||| |
|
|
| T |
36165515 |
ttatacactcaacaacccgggaaccttagcaatgtgggactagaaacaaattacaaacaacttcaaaactaacttcaacacccactcttatgcctagcgt |
36165614 |
T |
|
| Q |
105 |
gggcccgagtctgattcccacacattataatgtttaaccaggctatgataccatgttaaataggtttggatctcatccca----aaagctagctc-aaag |
199 |
Q |
| |
|
| ||| |||||| ||||| |||||| ||| |||| | ||| | |||||||||| ||||| || |||||||||||| ||||||| ||| |||| |
|
|
| T |
36165615 |
gagcctgagtctaattcc--cacattgcaatctttatctcagctctaataccatgtttaatagactt-gatctcatcccaaattaaagctacctcaaaag |
36165711 |
T |
|
| Q |
200 |
gatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
| ||||||||||||| |||| || ||||||||||| | |||||| |||||| ||| || ||||||||||| ||||||||||||| |
|
|
| T |
36165712 |
ggtgagggtactcaaacatatttatacactcaatagcc---gaacctaagcaatgtgggactaacaacaaactacaaacaacttcaaaac |
36165798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 55240715 - 55240645
Alignment:
| Q |
149 |
atgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
55240715 |
atgataccatgctaaatagatttggatctcatcccaaaagctcgctcaaaagatgagggtactcaagcata |
55240645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 8837026 - 8837095
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |||| |
|
|
| T |
8837026 |
tgataccatgttaaataggtttgaatctcatcccaaagtttagctcaaagaatgagggtactcaaacata |
8837095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 1460459 - 1460404
Alignment:
| Q |
17 |
caacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1460459 |
caacccgagaacctgagcaatgtgagacaaataacaaactacaaacaacttcaaaa |
1460404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 34542277 - 34542360
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc |
109 |
Q |
| |
|
|||||||||||| ||||||||| |||||| |||| |||| || ||||| |||||| |||||||| |||| |||||||||||||| |
|
|
| T |
34542277 |
aacctgagcaatatgggacaaacaacaaattacacacaattttaaaatcaacttcaacacccactctcatgcctagcgtgggcc |
34542360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 53090048 - 53090123
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc |
80 |
Q |
| |
|
|||||||||||||| ||||||||| | | ||||||| ||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
53090048 |
ttatacactcaacaccctgaaaacttaaacaatgtgtgactaacaacaaactacaaacaacttcaaaatcaacttc |
53090123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 55240510 - 55240447
Alignment:
| Q |
152 |
ataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaag |
215 |
Q |
| |
|
|||||||||||||| || ||| |||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
55240510 |
ataccatgttaaattggcttgaatctcatcccaaaagctaactcaaaggatgaggatactcaag |
55240447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 23564152 - 23564227
Alignment:
| Q |
32 |
agcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtggg |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| |||| |||||| |||| ||||||||| |||||||||| |
|
|
| T |
23564152 |
agcaatgtgggataaataacaaactacaatcaactttaaaaccaacttcaacactcaccctcacatctagcgtggg |
23564227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 11785044 - 11784979
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
11785044 |
ttatacactcaacagtccgagaacctgagtaatgtgggactaacaacaaactacaaacaacttcaa |
11784979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 18523020 - 18523069
Alignment:
| Q |
170 |
ttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18523020 |
ttggatctcataccaaaagctcgctcaaaggatgatggtactcaagcata |
18523069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 18523183 - 18523264
Alignment:
| Q |
138 |
ttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||| |||| |||||| ||| ||||||| |||||||| ||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
18523183 |
ttaacccggctctgatactctgtgaaataggcttggatctgctcccaaaagatacctcaaaggatgagggtactcaaacata |
18523264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 23566628 - 23566689
Alignment:
| Q |
54 |
actacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtc |
115 |
Q |
| |
|
|||||| |||||||||||| |||||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
23566628 |
actacagacaacttcaaaaccaacttcaacatccaccctcacgcctagcgtgggcctgagtc |
23566689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 19680588 - 19680648
Alignment:
| Q |
49 |
aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc |
109 |
Q |
| |
|
||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
19680588 |
aacaaactacaaataactttaaaaccaactttaacacccaccctcacgcctagcgtgggcc |
19680648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 53089831 - 53089935
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgt |
104 |
Q |
| |
|
||||||||| |||| ||| |||||||| || ||||||| || ||||||||||| ||||||||||| || |||| |||| ||||||||| ||||||| |
|
|
| T |
53089831 |
ttatacacttaacagtctgggaacctgagtaaagtgggactaacaacaaactacatgcaacttcaaaactaccttcaacacacaccctcacctctagcgt |
53089930 |
T |
|
| Q |
105 |
gggcc |
109 |
Q |
| |
|
||||| |
|
|
| T |
53089931 |
gggcc |
53089935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 55240440 - 55240376
Alignment:
| Q |
8 |
tacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |||| |
|
|
| T |
55240440 |
tacactcaacaacctgaaaacctgagcaatataaaactaacaacaaactacaaacaactttaaaa |
55240376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 857011 - 857133
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctgga |
249 |
Q |
| |
|
|||||||||||| |||| |||||| | ||||||||||||| |||||||| || ||||| || |||||||| || ||| ||||| |||| |||| || |
|
|
| T |
857011 |
tgataccatgtttaataagtttggttatcatcccaaaagcaagctcaaatgaggaggggacccaagcatatttatacaatcaattatccgagaacttgag |
857110 |
T |
|
| Q |
250 |
caatgtaagacaaataacaaact |
272 |
Q |
| |
|
||||||| |||| | |||||||| |
|
|
| T |
857111 |
caatgtaggacatacaacaaact |
857133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 23564284 - 23564402
Alignment:
| Q |
170 |
ttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaa |
269 |
Q |
| |
|
||||||||||||||||| |||| || ||| ||||| ||| || || ||||||| |||||||| | | | |||||| |||||| |||||||||||| |
|
|
| T |
23564284 |
ttggatctcatcccaaatgctaacttaaaagatgaaggttctaaaacatacttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaa |
23564383 |
T |
|
| Q |
270 |
actacagacaacttcaaaa |
288 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
23564384 |
actacaaacaacttcaaaa |
23564402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 11785068 - 11784979
Alignment:
| Q |
197 |
aaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagacaacttcaa |
286 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||| |||||| ||||||| ||||| ||| || ||||||||||| |||||||||| |
|
|
| T |
11785068 |
aaggatgagggtactcaaacatatttatacactcaacagtccgagaacctgagtaatgtgggactaacaacaaactacaaacaacttcaa |
11784979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 18523274 - 18523347
Alignment:
| Q |
13 |
tcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacc |
86 |
Q |
| |
|
||||||||| | |||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
18523274 |
tcaacaacccggaaacctgagcaatgtggggttagaaacaaactacaaacaacttcaaaaccaacttcaacacc |
18523347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 1460451 - 1460403
Alignment:
| Q |
241 |
gaacctggacaatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1460451 |
gaacctgagcaatgtgagacaaataacaaactacaaacaacttcaaaac |
1460403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 19680320 - 19680380
Alignment:
| Q |
159 |
gttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||| | |||||||| |||||||||| ||||||||| || ||||| ||||||||||| |
|
|
| T |
19680320 |
gttaaatatgcttggatcttatcccaaaagttagctcaaaagaggaggggactcaagcata |
19680380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 36165944 - 36166012
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaat |
73 |
Q |
| |
|
|||||||||||||| || |||| ||||| |||||| ||| || || |||||||||||||||||||||| |
|
|
| T |
36165944 |
ttatacactcaacatcccgaaagcctgaataatgtgagactaaaaataaactacaaacaacttcaaaat |
36166012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 44019614 - 44019649
Alignment:
| Q |
173 |
gatctcatcccaaaagctagctcaaaggatgagggt |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44019614 |
gatctcatcccaaaagttagctcaaaggatgagggt |
44019649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 37927696 - 37927662
Alignment:
| Q |
46 |
aataacaaactacaaacaacttcaaaattaacttc |
80 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37927696 |
aataacaaactacaaacaacttcaaaactaacttc |
37927662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 41389425 - 41389475
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgaggg |
207 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||||||||| |||| |
|
|
| T |
41389425 |
atgttaaataggtttgaatctaatctcaaaaggtagctcaaaggataaggg |
41389475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 2346488 - 2346439
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgaggg |
207 |
Q |
| |
|
||||||||| | || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2346488 |
tgttaaataagcttagatctcatcccaaaagctagctcgaaggaggaggg |
2346439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 53089795 - 53089900
Alignment:
| Q |
185 |
aaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagacaacttc |
284 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| || ||||| || |||| ||||||||| || || ||| || ||||||||||| ||||||| |
|
|
| T |
53089795 |
aaagctagctttaaggatgagggtactcaaacatatttatacacttaacagtctgggaacctgagtaaagtgggactaacaacaaactacatgcaacttc |
53089894 |
T |
|
| Q |
285 |
aaaact |
290 |
Q |
| |
|
|||||| |
|
|
| T |
53089895 |
aaaact |
53089900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 55240643 - 55240578
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||| | || || |||||||||||||||||||||| |
|
|
| T |
55240643 |
ttatatactcaacatcctgaaaacttgagcaatacgaaactaacaacaaactacaaacaacttcaa |
55240578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 8837128 - 8837168
Alignment:
| Q |
32 |
agcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
8837128 |
agcaatgtgagacaaataacatactacaaataacttcaaaa |
8837168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 16412983 - 16413019
Alignment:
| Q |
170 |
ttggatctcatcccaaaagctagctcaaaggatgagg |
206 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
16412983 |
ttggatctcatctcaaaagccagctcaaaggatgagg |
16413019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 37928122 - 37928070
Alignment:
| Q |
170 |
ttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatactt |
222 |
Q |
| |
|
|||| ||||||||||||| |||| |||||| | || ||||||||||||||||| |
|
|
| T |
37928122 |
ttggttctcatcccaaaaactagttcaaagtacgatggtactcaagcatactt |
37928070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 54137220 - 54137345
Alignment:
| Q |
86 |
ccaccctcacgcctagcgtgggcccgagtctgattcccacacattataatgtttaaccaggctatgataccatgttaaataggtttggatctcatcccaa |
185 |
Q |
| |
|
|||||||||||||||| ||||||| | |||| |||| |||| || ||| |||||| | || |||||||||||||| | | ||| |||||||||||| |
|
|
| T |
54137220 |
ccaccctcacgcctagagtgggcctgggtctaattctcaca--ttgcaatccttaacccgactctgataccatgttaattgagcttgaatctcatcccaa |
54137317 |
T |
|
| Q |
186 |
aagctagctcaaaggatgagggtactca |
213 |
Q |
| |
|
|||||| || ||||| | ||||| |||| |
|
|
| T |
54137318 |
aagctaactaaaaggctaagggtgctca |
54137345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 275
Target Start/End: Original strand, 8745733 - 8745978
Alignment:
| Q |
30 |
tgagcaatgtgggacaaataacaaactaca--aacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccacac |
127 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||| ||||||||||||| ||||| |||| |||||||| ||||||||||| || ||||| |||| || || |
|
|
| T |
8745733 |
tgagtaatgtaggaaaaataacaaactacacaaacaacttcaaaaccaactttaacactcaccctcatgcctagcgtggccctgagtccaattcacatac |
8745832 |
T |
|
| Q |
128 |
attataatgtttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcaca |
227 |
Q |
| |
|
| ||| |||||| || ||||| |||||||||| | ||||||||||||||||||| ||||| ||||||||||| ||||| | |||| || ||| |
|
|
| T |
8745833 |
--tggaatccttaacccaactctgatatcatgttaaatgagcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttataca |
8745930 |
T |
|
| Q |
228 |
ctcaatagtccgggaacctggacaatgtaagacaaataacaaactaca |
275 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
8745931 |
ctcaacagtccgggaacctgtacaatgtaggacacataacaaactaca |
8745978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 35035274 - 35035363
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctca |
94 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
35035274 |
ttatacactcaacaaactgaaaacctgagcaatgtggaacaaataactaactataaacaactttaaaattaacttcaacacacaccctca |
35035363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 35035084 - 35035161
Alignment:
| Q |
32 |
agcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc |
109 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||||||| |||||| |||||||||||| || |||||||||||| |
|
|
| T |
35035084 |
agcaatgtgagacaaataacaaattataaacaacttcaaaatcaacttcaacacccaccctcgcgtctagcgtgggcc |
35035161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 41243265 - 41243332
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
41243265 |
ttatagactccacaacctgaaaacctaagcaatatgggacaaataacaaactacaaacaacgtcaaaa |
41243332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 287
Target Start/End: Original strand, 2911952 - 2912081
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaa |
257 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||| |||||| ||||| |||| |||| |||| || ||||||||||| || |||||||| | |||| |
|
|
| T |
2911952 |
tgttaaataagtttaaatctcatcccaaaccctaactcaaatgatgaaggtattcaaacatatttatacactcaatagcccaggaacctgatccatgtgg |
2912051 |
T |
|
| Q |
258 |
gacaaataacaaactacagacaacttcaaa |
287 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |
|
|
| T |
2912052 |
gacaaataacaaactacaaacaactccaaa |
2912081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 5473313 - 5473259
Alignment:
| Q |
43 |
acaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
5473313 |
acaaataacaaactacaaacaacttcaaaaccaacttcaacacccaccttcacgc |
5473259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 36496223 - 36496281
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggt |
208 |
Q |
| |
|
||||||||||| |||| || ||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
36496223 |
tgataccatgtgaaatgggcttgaatctcatcccaaaagctagctcaatggatgagggt |
36496281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 41243209 - 41243259
Alignment:
| Q |
165 |
taggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaag |
215 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
41243209 |
taggtttggatctcatcccaaaagttagctcaacggatgaggttactcaag |
41243259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 35035393 - 35035454
Alignment:
| Q |
137 |
tttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaa |
198 |
Q |
| |
|
||||||| ||| |||||| ||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35035393 |
tttaacctagctctgatactatgttcaatgggtttggatctcatcccaaaagctagctcaaa |
35035454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 23972452 - 23972401
Alignment:
| Q |
29 |
ctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc |
80 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||| |||||| |
|
|
| T |
23972452 |
ctgagcaatgtgggaaaaataacaaactacaaacaattttaaaatcaacttc |
23972401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 6720833 - 6720887
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtact |
211 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6720833 |
atgttaaatagccttgtatctcatcccaaaagctagcctaaaggatgagggtact |
6720887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 289
Target Start/End: Original strand, 8745645 - 8745778
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaa |
257 |
Q |
| |
|
|||||||| |||||||||||| || ||||| ||||| |||||| |||||||||||| ||| || ||||||||||| | ||||| || |||||| |
|
|
| T |
8745645 |
tgttaaatgagtttggatctcaccctaaaagttagcttaaaggacgagggtactcaacaatatttagacactcaatagcctaggaacatgagtaatgtag |
8745744 |
T |
|
| Q |
258 |
gacaaataacaaact--acagacaacttcaaaac |
289 |
Q |
| |
|
|| |||||||||||| ||| ||||||||||||| |
|
|
| T |
8745745 |
gaaaaataacaaactacacaaacaacttcaaaac |
8745778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 2912036 - 2912081
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaa |
71 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2912036 |
aacctgatccatgtgggacaaataacaaactacaaacaactccaaa |
2912081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 23972534 - 23972477
Alignment:
| Q |
162 |
aaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
||||||| ||| ||||||| ||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
23972534 |
aaataggcttgaatctcattccaaaagttaactcaaaggatgagggtactcaaacata |
23972477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 36496118 - 36496168
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggt |
208 |
Q |
| |
|
|||||||| || |||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
36496118 |
tgttaaatgggcttgggtcttataccaaaagctagctcaaaggatgagggt |
36496168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 33804218 - 33804271
Alignment:
| Q |
53 |
aactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgg |
106 |
Q |
| |
|
|||||||||||||||||||| |||| | |||| ||||||||||| |||||||| |
|
|
| T |
33804218 |
aactacaaacaacttcaaaaccaactccaacactcaccctcacgcatagcgtgg |
33804271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 35035507 - 35035535
Alignment:
| Q |
42 |
gacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
35035507 |
gacaaataacaaactacaaacaacttcaa |
35035535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 232
Target Start/End: Complemental strand, 20491104 - 20490919
Alignment:
| Q |
46 |
aataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccacacattataatgtttaaccag |
145 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||| | ||||||||||||| |||| ||||||| | || ||||| |||||| |||| |||||| | |
|
|
| T |
20491104 |
aataacaaactaaaaaaaacttcaaaaccaacttcaatacccaccctcacgtctagtgtgggcctggatccaattcc--cacattgtaatcattaacctg |
20491007 |
T |
|
| Q |
146 |
gctatgataccatgttaaataggtttggatctcatccc-aaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaa |
232 |
Q |
| |
|
||| |||||||||||||||| | |||||||||||||| ||||||||||||||| || ||||||||||||| ||| || |||||||| |
|
|
| T |
20491006 |
gctctgataccatgttaaatgagcttggatctcatcccaaaaagctagctcaaaagacgagggtactcaagtatatttatacactcaa |
20490919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 20995739 - 20995593
Alignment:
| Q |
25 |
aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattccca |
124 |
Q |
| |
|
||||||| |||||||| ||| |||||||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||| ||| | |
|
|
| T |
20995739 |
aaacctgtgcaatgtgagacgaataacaacctataaacaacttcaaaactaacttcaacacccaccctcacgcctaacgtgggcccgggtctaatttc-- |
20995642 |
T |
|
| Q |
125 |
cacattataatgtttaaccaggctatgataccatgttaaataggtttgga |
174 |
Q |
| |
|
|||||| ||| ||||||| |||| | ||| ||||||||||||| ||||| |
|
|
| T |
20995641 |
cacattgcaatctttaacc-ggctctcatatcatgttaaataggcttgga |
20995593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 287
Target Start/End: Complemental strand, 50196989 - 50196848
Alignment:
| Q |
145 |
ggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaac |
244 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || |||| || |||||||| ||| ||| ||| |
|
|
| T |
50196989 |
ggctttgataccatgttaaataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagtacggaaac |
50196890 |
T |
|
| Q |
245 |
ctggacaatgtaagacaaataacaaactacagacaacttcaaa |
287 |
Q |
| |
|
|| |||||| |||||||| ||||||| | | ||||||||| |
|
|
| T |
50196889 |
atgagcaatgt-ggacaaatatcaaactagaaataacttcaaa |
50196848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 289
Target Start/End: Original strand, 30130780 - 30130912
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||| || |||||||| || || ||||||| ||||||| |
|
|
| T |
30130780 |
atgttaaataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacagcccaagaacctgagcaatgta |
30130879 |
T |
|
| Q |
257 |
agacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
|||| ||| || |||| | | ||||||||||| |
|
|
| T |
30130880 |
ggacacatatcagactaaaaataacttcaaaac |
30130912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 30135500 - 30135562
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30135500 |
atgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcata |
30135562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 30141629 - 30141691
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30141629 |
atgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcata |
30141691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 30145051 - 30145113
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
30145051 |
atgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcata |
30145113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 50197207 - 50197100
Alignment:
| Q |
179 |
atcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagac |
278 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| | |||| || |||||||| ||| || ||||||| |||||| |||||||||||||||| | || |
|
|
| T |
50197207 |
atcccaaaagctagatcaaaggatgagggtactcgaccatatttatacactcaacagttcgtgaacctgagcaatgtgggacaaataacaaactataaac |
50197108 |
T |
|
| Q |
279 |
aacttcaa |
286 |
Q |
| |
|
|||||||| |
|
|
| T |
50197107 |
aacttcaa |
50197100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 20982839 - 20982759
Alignment:
| Q |
42 |
gacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcc |
122 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||| |||||||||| ||||||||| ||| | |||| ||||| |
|
|
| T |
20982839 |
gacaaataacaaactacaaacaactttaaaactaacttcaacatccaccctcactcctagcgtgcgcctgggtctaattcc |
20982759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 11047575 - 11047516
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagc |
216 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
11047575 |
atgttaaatgggtttggatctcatcataaaagttagctcaaaggatgagggtactcaagc |
11047516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 22312496 - 22312213
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgt |
104 |
Q |
| |
|
|||||||||||||| | || |||| |||| |||||| || |||||||||||||||| || || |||| |||||| |||| ||| | |||| ||||||| |
|
|
| T |
22312496 |
ttatacactcaacatcatggaaacatgaggaatgtgaaactaataacaaactacaaataattttaaaaccaacttcaacactcactcacacgtctagcgt |
22312397 |
T |
|
| Q |
105 |
gggcccgagtctgattcccacacattataatgtttaaccaggctatgataccatgttaaataggtttggatctc--atcccaaaagctagctcaaaggat |
202 |
Q |
| |
|
|| | ||||| ||| |||||| ||| ||||||| | || ||||||||||||||||||||||| ||||| |||| | || ||||||||| ||| |
|
|
| T |
22312396 |
ggatctgagtccaatt--tgcacattgcaatctttaacccgactctgataccatgttaaataggtttgaatctcatatcctcagagatagctcaaatgat |
22312299 |
T |
|
| Q |
203 |
gagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
| || ||||||| |||| || | |||||| ||| | ||| ||| || ||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
22312298 |
gtggatactcaaacatatttatatactcaacagt-caagaaactgagcattgtgagactaataacaaactacaaacaacttcaaaac |
22312213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 50197144 - 50197100
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50197144 |
aacctgagcaatgtgggacaaataacaaactataaacaacttcaa |
50197100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 30134104 - 30134153
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagg |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
30134104 |
atgttaaataggcttggatctcatcccaaaagttagctcaaatgatgagg |
30134153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 20982648 - 20982694
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||| |||| |
|
|
| T |
20982648 |
aacctgagcaatgtaggataaataacaaactacaaacaactttaaaa |
20982694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 47446172 - 47446106
Alignment:
| Q |
144 |
aggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtac |
210 |
Q |
| |
|
||||| |||||||||||||| | || ||||||||||||||||||| ||| |||| ||||||| |||| |
|
|
| T |
47446172 |
aggctctgataccatgttaattgggcttggatctcatcccaaaagttagatcaacggatgagagtac |
47446106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 11047491 - 11047446
Alignment:
| Q |
25 |
aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
11047491 |
aaacctgagcaatgtgggactagaaacaaactacaaacaacttcaa |
11047446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 12237007 - 12237076
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||| |||||||||||| | ||||||||| | |||||||||||||||| |||| | ||||||||||| |
|
|
| T |
12237007 |
tgatactatgttaaataggctcggatctcattctaaaagctagctcaaagtatgaagacactcaagcata |
12237076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 20982186 - 20982267
Alignment:
| Q |
44 |
caaataacaaactacaaacaacttcaaaattaacttccacaccca-ccctcacgcctagcgtgggcccgagtctgattccca |
124 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||| ||||||| |||||||| ||||| |||||| ||||| ||||||| |
|
|
| T |
20982186 |
caaataacaaactacaaacaattttaaaaccaacttcaacacccacccctcacggctagcttgggcctgagtccaattccca |
20982267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 50197037 - 50196996
Alignment:
| Q |
147 |
ctatgataccatgttaaataggtttggatctcatcccaaaag |
188 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
50197037 |
ctatgataccatgttaaataggtttggatatgatcccaaaag |
50196996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 20995343 - 20995427
Alignment:
| Q |
25 |
aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcc |
109 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| || |||| || |||| |||||| |||||||| ||||||| ||| ||||||| |
|
|
| T |
20995343 |
aaacctaagcaatgtaggacaaataacaaacgacgaacatttttaaaaccaacttcaacacccactctcacgcttagtgtgggcc |
20995427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 20995809 - 20995690
Alignment:
| Q |
173 |
gatctcatcccaaaag--ctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaa |
270 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||| |||| |||| || ||| |||| || ||| |||||| |||||| |||| |||||||| |
|
|
| T |
20995809 |
gatctcatcgcaaaagagctagctcaaaggatgagcgtagtcaaacatatttatacattcaacggttcggaaacctgtgcaatgtgagacgaataacaac |
20995710 |
T |
|
| Q |
271 |
ctacagacaacttcaaaact |
290 |
Q |
| |
|
||| | |||||||||||||| |
|
|
| T |
20995709 |
ctataaacaacttcaaaact |
20995690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 20995535 - 20995577
Alignment:
| Q |
30 |
tgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
20995535 |
tgagcaatgtggaataaataacaaactacaaacaactttaaaa |
20995577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 289
Target Start/End: Complemental strand, 10645761 - 10645542
Alignment:
| Q |
75 |
aacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccacacattataatgtttaacca-------ggctatgataccatgttaaatag |
167 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||| ||||||||| || ||| |||||||| || | |||||||||||||||||| |
|
|
| T |
10645761 |
aacttcaacacccaccctcacgcctagcgtgggcctgagtacaattcccaca--ttggaatctttaaccatttaacaggatctgataccatgttaaatag |
10645664 |
T |
|
| Q |
168 |
gtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataac |
267 |
Q |
| |
|
|||| ||||||||||||| ||| | ||| ||| ||| ||||||||||||||| || |||||||||| |||||||||| | |||| |||||| ||| |
|
|
| T |
10645663 |
gttttgatctcatcccaacagccaactctaagtatgggggtactcaagcatatttatacactcaataccgcgggaacctgagcgatgtgggacaaacaac |
10645564 |
T |
|
| Q |
268 |
aaactacagacaacttcaaaac |
289 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
10645563 |
aaactacaaacaacctcaaaac |
10645542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 3371709 - 3371661
Alignment:
| Q |
170 |
ttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcat |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
3371709 |
ttggatctcatcccaaaagctacctcaaaagatgagggtactcaagcat |
3371661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 10645868 - 10645794
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaa |
232 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||| |||| || |||||||| |
|
|
| T |
10645868 |
tgttaaataggttttgatctcatcttaaaagatagctctaaggatgagggtactcaaacatatttatacactcaa |
10645794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 32968543 - 32968612
Alignment:
| Q |
25 |
aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctca |
94 |
Q |
| |
|
|||| |||||||||||| |||||||||||| ||| ||||||||||||| ||| ||| | ||||||||||| |
|
|
| T |
32968543 |
aaacttgagcaatgtggtacaaataacaaattacgaacaacttcaaaactaaattcaaaacccaccctca |
32968612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 48957855 - 48957774
Alignment:
| Q |
25 |
aaacctgagcaatgtgggacaaataacaaactac-aaacaacttcaaaattaacttccacacccaccctcacgcctagcgtg |
105 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||| ||||||| |||||| |||| |||| ||| |||||||||| |
|
|
| T |
48957855 |
aaacctgagcaatatgtgacaaataacaaactacaaaacaatttcaaaaccaacttcaacacacaccatcatgcctagcgtg |
48957774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 10514994 - 10514950
Alignment:
| Q |
161 |
taaataggtttggatctcatcccaaaagctagctcaaaggatgag |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10514994 |
taaatgggtttggatctcatcccaaaagctacctcaaaggatgag |
10514950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 12178099 - 12178143
Alignment:
| Q |
175 |
tctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
12178099 |
tctcatcccaaaagctaggtcaaaggatgagggtactcaaacata |
12178143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 3143015 - 3142953
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| ||| ||| |||| ||||||| |||||| |
|
|
| T |
3143015 |
atgttaaataagtttggatgtcatcccaaaagctaactcgaagaatgaaggtactcgagcata |
3142953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 10645589 - 10645543
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10645589 |
aacctgagcgatgtgggacaaacaacaaactacaaacaacctcaaaa |
10645543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 10200018 - 10199962
Alignment:
| Q |
152 |
ataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggt |
208 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
10200018 |
ataccatgttaaatgggcttgaatctcatcccaaaagttaattcaaaggatgagggt |
10199962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 30602474 - 30602410
Alignment:
| Q |
156 |
catgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatac |
220 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||| |||| |||| | ||||||||||||||| |
|
|
| T |
30602474 |
catgttaaataggtttggatcttatctcaaaaattagttcaatggatcaaggtactcaagcatac |
30602410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 49293072 - 49292960
Alignment:
| Q |
174 |
atctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaagacaaataacaaacta |
273 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||| |||| ||| || |||||||||||| ||||| ||| |||||| ||| | ||||||||| |
|
|
| T |
49293072 |
atctcatctcaaaagctagctcaagggacgagggtattcaaaaatatttatacactcaatagtttgggaatctgagcaatgtgggactagaaacaaacta |
49292973 |
T |
|
| Q |
274 |
cagacaacttcaa |
286 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
49292972 |
caaacaacttcaa |
49292960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 28843440 - 28843515
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttc |
80 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||||| || || ||||||||||||||||||||||||| |||||| |
|
|
| T |
28843440 |
ttatacactcaacggtccgaaaacttgagcgatgtgaaactaaaaacaaactacaaacaacttcaaaatcaacttc |
28843515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 30602395 - 30602348
Alignment:
| Q |
25 |
aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||| |||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30602395 |
aaacttgagtaatgtgaaacaaataacaaactacaaacaacttcaaaa |
30602348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 49293001 - 49292960
Alignment:
| Q |
29 |
ctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
49293001 |
ctgagcaatgtgggactagaaacaaactacaaacaacttcaa |
49292960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 35536833 - 35536929
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctag |
101 |
Q |
| |
|
||||||| |||||| ||| ||||| || ||||||| || || |||||||||| |||||||| |||| |||||| | || ||||||||||||||| |
|
|
| T |
35536833 |
ttatacattcaacagtttgagaacctaagtaatgtggaactaacaacaaactaccaacaactttaaaacgaacttcaatactcaccctcacgcctag |
35536929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 289
Target Start/End: Complemental strand, 30525507 - 30525380
Alignment:
| Q |
160 |
ttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaaga |
259 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||||||||| ||||| ||||||||| |||| || ||||||||||| | |||||||| ||||||| || |
|
|
| T |
30525507 |
ttaaatgggtttggatctcatccaaaaaggtagctcaaaagatgaaggtactcaaacatatttatacactcaatagctcaggaacctgaacaatgt-gga |
30525409 |
T |
|
| Q |
260 |
caaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
||||||||||||||| |||||||||||||| |
|
|
| T |
30525408 |
caaataacaaactac-gacaacttcaaaac |
30525380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 288
Target Start/End: Complemental strand, 30525305 - 30525167
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctgga |
249 |
Q |
| |
|
|||||||||||||||| | ||| |||||||||||||||||||||||||| ||||| |||||||| |||| || ||||| || | | |||||| | |
|
|
| T |
30525305 |
tgataccatgttaaatgtgcttgtatctcatcccaaaagctagctcaaagaatgagagtactcaaacatatttatacactaaacaacactagaacctaaa |
30525206 |
T |
|
| Q |
250 |
caatgtaagacaaataacaaactacagacaacttcaaaa |
288 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| |
|
|
| T |
30525205 |
taatgtagagcaaataacaaactacaaacaacttcaaaa |
30525167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 32879693 - 32879808
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaa |
257 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||| || ||||||||||||||||| | |||| || ||||| | | || ||||||| ||||||| | |
|
|
| T |
32879693 |
tgttaaatagtcttgaatctcatcccaaaaactaacttaaaggatgagggtactcgaacatatttaaacacttgacatcccatgaacctgaacaatgtga |
32879792 |
T |
|
| Q |
258 |
gacaaataacaaacta |
273 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32879793 |
gacaaataacaaacta |
32879808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 42160403 - 42160253
Alignment:
| Q |
49 |
aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccacacattataatgtttaaccaggct |
148 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| |||||||||||||||| || |||||| |||||| ||||| ||||||| ||| |||||| ||| |
|
|
| T |
42160403 |
aacaaactataaacaactttaaaaccaacttcaacacccaccctcacgcttatcgtgggtttgagtctaattcc--cacattacaatctttaacttggcg |
42160306 |
T |
|
| Q |
149 |
atgataccatgttaaata---ggtttggatctcatcccaaaagctagctcaaa |
198 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| |||| ||||||||| |
|
|
| T |
42160305 |
ttgataccatgctaaataatgagtttggatttcatcctaaaatttagctcaaa |
42160253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 28883718 - 28883781
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
28883718 |
ttatacacttaacaacccgaaaacctgagc----tgggactaacaacaaactacaaacaacttcaaaa |
28883781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 12704336 - 12704276
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||| ||||| ||||||||| |||| |
|
|
| T |
12704336 |
tgttaaataggtttggatcttatcc-aaaagctagcacaaaagatgaaggtactcaaacata |
12704276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 28883655 - 28883716
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||| ||| || |||||||||||||| |||| |
|
|
| T |
28883655 |
tgttgaataggtttggatctcatctcaaaagctacctcggagaatgagggtactcaaacata |
28883716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 33199728 - 33199675
Alignment:
| Q |
236 |
tccgggaacctggacaatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33199728 |
tccgagaacctgagcagtgtaagacaaataacaaaatacagacaacttcaaaac |
33199675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 27461292 - 27461254
Alignment:
| Q |
34 |
caatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
27461292 |
caatgtgggacagataacaaactacatacaacttcaaaa |
27461254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 32884610 - 32884656
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
32884610 |
aacctgagcaatgtgagacaaataacaaactacgaacattttcaaaa |
32884656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 12704259 - 12704219
Alignment:
| Q |
30 |
tgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||||| |
|
|
| T |
12704259 |
tgagcgatgtgggactaacaacaaactacaaacaacttcaa |
12704219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 21428161 - 21428217
Alignment:
| Q |
123 |
cacacattataatgtttaaccaggctatgataccatgttaaataggtttggatctca |
179 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||||||||||| || | |||||||| |
|
|
| T |
21428161 |
cacacattgtaatctttaacccggctctgataccatgttaaatgggctaggatctca |
21428217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 30525195 - 30525167
Alignment:
| Q |
44 |
caaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30525195 |
caaataacaaactacaaacaacttcaaaa |
30525167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 30525425 - 30525347
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgg |
106 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| | ||||||||||| |||||| |||| || |||||| ||||||||| |
|
|
| T |
30525425 |
aacctgaacaatgtgg-acaaataacaaactacga-caacttcaaaacgaacttcatcacctactctcacgtctagcgtgg |
30525347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 42160517 - 42160477
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaa |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
42160517 |
tgttaaatgagtttggatctcatcccaaaagttagctcaaa |
42160477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 42160579 - 42160527
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtac |
210 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |||||| || |||||| |||| |
|
|
| T |
42160579 |
tgttaaataagtttggatctcatcctaaaagttagctcgaaagatgagtgtac |
42160527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 8401973 - 8402054
Alignment:
| Q |
138 |
ttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8401973 |
ttaacccggctctgataccatgttaaataagtttggatctcattccaaaagttagctcaaaggaggagggtactcaagcata |
8402054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 42193326 - 42193408
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggc |
108 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| |||||||||||| ||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
42193326 |
aacctgagcaatgtgagacaaataacaatctacaagcaacttcaaaatcgacttcaacatccaccctcacgtctagcgtgggc |
42193408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 8402102 - 8402183
Alignment:
| Q |
138 |
ttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||| |||| |
|
|
| T |
8402102 |
ttaacccggctttgataccatgttaaataaatttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacata |
8402183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 6424068 - 6423931
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctgga |
249 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||| |||| |||||| ||| ||||| | ||||||| |||| || |||||||| || | ||| || || |
|
|
| T |
6424068 |
tgataccatgttaaataagattgaatctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttatacactcaacagctggagaaacttga |
6423969 |
T |
|
| Q |
250 |
-caatgtaagacaaataacaaactacagacaacttcaa |
286 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6423968 |
acaatgtgagacaaataacaaactacagacaacttcaa |
6423931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 28431955 - 28432068
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaacctggacaatgtaa |
257 |
Q |
| |
|
||||||||||| ||| || |||| ||||||||||| | ||||||||||| |||||||||||| || ||||||| || || ||||||| |||||| | |
|
|
| T |
28431955 |
tgttaaataggcttgaatttcattccaaaagctagtttaaaggatgaggatactcaagcatatttatacactcagcagcccaggaacctaagcaatgtga |
28432054 |
T |
|
| Q |
258 |
gacaaataacaaac |
271 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28432055 |
gacaaataacaaac |
28432068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 42042187 - 42042131
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagg |
206 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
42042187 |
tgataccatgttaaataagtttggatctcatcccaaaaactagctcaatgaatgagg |
42042131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 10668556 - 10668493
Alignment:
| Q |
6 |
tatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
||||||||||| | |||| ||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
10668556 |
tatacactcaatagcctgggaacctgagcaatgtgagactaa-aacaaactacaaacaacttcaa |
10668493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 33408175 - 33408223
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaa |
198 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
33408175 |
tgataccatgttaaatgagtttgaatctcatcccaaaagttagctcaaa |
33408223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 6423997 - 6423931
Alignment:
| Q |
5 |
ttatacactcaacaacctga-aaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
|||||||||||||| | || |||| ||| ||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
6423997 |
ttatacactcaacagctggagaaacttgaacaatgtgagacaaataacaaactacagacaacttcaa |
6423931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 8402185 - 8402265
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacac |
85 |
Q |
| |
|
|||||||||| ||| || ||||||||||| |||||| | || ||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
8402185 |
ttatacactcgacagcccgaaaacctgagagatgtggaagtaacaacaaactacaaacaactttaaaaccaacttcaacac |
8402265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 31540298 - 31540346
Alignment:
| Q |
24 |
aaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||| |||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
31540298 |
aaaatctgagcaatgtgagactagaaacaaactacaaacaacttcaaaa |
31540346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 43829683 - 43829885
Alignment:
| Q |
28 |
cctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcccgagtctgattcccacac |
127 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| |||||||||| |||||| ||||||||||||||| ||| ||||||| || || | |||||||| |
|
|
| T |
43829683 |
cctgaacaatgtgggactagaaacaaactacaaggaacttcaaaaccaacttcaacacccaccctcacgtctaatgtgggcctgaatccaactcccacac |
43829782 |
T |
|
| Q |
128 |
attataatgtttaaccaggctatgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcaca |
227 |
Q |
| |
|
| ||| |||||| | || |||||||||||| ||| | || ||||||||||||| ||||||||||| ||||||||||||||||||||| || ||| |
|
|
| T |
43829783 |
--tgcaatccttaacccgactctgataccatgtttaatgagctttgatctcatcccaacagctagctcaatggatgagggtactcaagcatatttctaca |
43829880 |
T |
|
| Q |
228 |
ctcaa |
232 |
Q |
| |
|
||||| |
|
|
| T |
43829881 |
ctcaa |
43829885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 30841544 - 30841604
Alignment:
| Q |
159 |
gttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| | ||||||||||| ||||||| |||| |
|
|
| T |
30841544 |
gttaaataggtttggatctcatcccacaagttagtttaaaggatgaggatactcaaacata |
30841604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 43829620 - 43829728
Alignment:
| Q |
182 |
ccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaatagtccgggaa-cctggacaatgtaagacaaataacaaactacagacaa |
280 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||| || |||||||| |||||||||| |||| ||||||| ||| | ||||||||||| || |
|
|
| T |
43829620 |
ccaaaagctagctcaaagaatgaggatactcaaacatatttatacactcaacagtccgggaatcctgaacaatgtgggactagaaacaaactacaaggaa |
43829719 |
T |
|
| Q |
281 |
cttcaaaac |
289 |
Q |
| |
|
||||||||| |
|
|
| T |
43829720 |
cttcaaaac |
43829728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 41470245 - 41470194
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggt |
208 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
41470245 |
atgttaaatggacttggatctcatctcaaaagctagttcaaaggatgagggt |
41470194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 73
Target Start/End: Original strand, 4762537 - 4762567
Alignment:
| Q |
43 |
acaaataacaaactacaaacaacttcaaaat |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4762537 |
acaaataacaaactacaaacaacttcaaaat |
4762567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 36201909 - 36201875
Alignment:
| Q |
38 |
gtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
|
|
| T |
36201909 |
gtgggacaaataacaaactataaacaacttcaaaa |
36201875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 41470181 - 41470116
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaa |
70 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
41470181 |
ttatacacccaacatcctgagaacctgagcaacgtgggactcctaagaaactccaaacaacttcaa |
41470116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 4762258 - 4762302
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggat |
202 |
Q |
| |
|
||||||||||| ||| |||| ||| |||||||||||||||||||| |
|
|
| T |
4762258 |
tgttaaataggcttgaatcttatctcaaaagctagctcaaaggat |
4762302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 38511113 - 38511058
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctca-tcccaaaagctagctcaaaggatgag |
205 |
Q |
| |
|
||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
38511113 |
tgataccatattaaaaag-tttggatctcactcccaaaatctagctcaaaggatgag |
38511058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 10742242 - 10742171
Alignment:
| Q |
26 |
aacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaattaacttccacacccaccctcacgc |
97 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
10742242 |
aacctgaacaatgtgggataaataacaaaatacaaacaacttcaaaactaacttcaacactcaccctcacgc |
10742171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 290
Target Start/End: Complemental strand, 10742327 - 10742194
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcatacttgcacactcaa-tagtccgggaacctggacaatgta |
256 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||| ||||||| ||| |||| || ||| |||| | || ||||||||| ||||||| |
|
|
| T |
10742327 |
tgttaaatgtgtttggatctcatcccaaaagctaaatcaaatgattagggtacccaaacatatttatacattcaacaactcggggaacctgaacaatgtg |
10742228 |
T |
|
| Q |
257 |
agacaaataacaaactacagacaacttcaaaact |
290 |
Q |
| |
|
|| |||||||||| |||| |||||||||||||| |
|
|
| T |
10742227 |
ggataaataacaaaatacaaacaacttcaaaact |
10742194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 6728652 - 6728585
Alignment:
| Q |
5 |
ttatacactcaacaacctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaaa |
72 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
6728652 |
ttatacacttaacaacccaaaaacctgaacaatgtgagacaaataacaaactataaacaactttaaaa |
6728585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 32406998 - 32407043
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctc |
195 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32406998 |
tgataccatgttaaatgagtttggatctcatcccaaaagctagctc |
32407043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 33104719 - 33104656
Alignment:
| Q |
158 |
tgttaaataggtttggatctcatcccaaaagctagctcaaa--ggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||| |
|
|
| T |
33104719 |
tgttaaataggtttggatctcatcccaaaaattagatcaaattggatgagggtattcaagcata |
33104656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 8517094 - 8517160
Alignment:
| Q |
5 |
ttatacactcaacaac-ctgaaaacctgagcaatgtgggacaaataacaaactacaaacaacttcaaa |
71 |
Q |
| |
|
||||||||||||| || |||||| | ||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
8517094 |
ttatacactcaactactctgaaa-catgagcaatgtgggactaacgacaaactacaaacaacttcaaa |
8517160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 11340007 - 11339968
Alignment:
| Q |
250 |
caatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
11340007 |
caatgtaagacaaataacaaactacaaacaactttaaaac |
11339968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 27134239 - 27134170
Alignment:
| Q |
150 |
tgataccatgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||||| | |||||||||| ||| |||| |||| |
|
|
| T |
27134239 |
tgataccatgttaaatgagtttgaatctcatcctaaaagctaagttaaaggatgagagtagtcaaacata |
27134170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 22483 - 22421
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
|||||| ||| | |||| ||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
22483 |
atgttatatacgcttggttctcatcccaaaagctaattcaaaggatgaaggtactcaagcata |
22421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0549
Description:
Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 1106 - 1067
Alignment:
| Q |
250 |
caatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
1106 |
caatgtaagacaaataacaaactacaaacaactttaaaac |
1067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 289
Target Start/End: Complemental strand, 3196 - 3157
Alignment:
| Q |
250 |
caatgtaagacaaataacaaactacagacaacttcaaaac |
289 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
3196 |
caatgtaagacaaataacaaactacaaacaactttaaaac |
3157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1432 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 932 - 994
Alignment:
| Q |
157 |
atgttaaataggtttggatctcatcccaaaagctagctcaaaggatgagggtactcaagcata |
219 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
932 |
atgttaaatagacttaaatctcatcccaaaagctcactcaaaggatgaggatactcaaacata |
994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 4667 - 4609
Alignment:
| Q |
49 |
aacaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtggg |
107 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| | ||||||| || ||||||||| |
|
|
| T |
4667 |
aacaaactacaaacaacttcaaaaccaacttcaacatcaaccctcatgcttagcgtggg |
4609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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