View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_37 (Length: 301)
Name: NF20464_low_37
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 46161703 - 46161967
Alignment:
| Q |
10 |
tcgaagaatatttagttcccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattc |
109 |
Q |
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| T |
46161703 |
tcgaataatatttagttcccatgtatatcatgattatgcaaagtttggccattttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattc |
46161802 |
T |
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| Q |
110 |
gttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacatataatcatt |
209 |
Q |
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| T |
46161803 |
gtt-cgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccacat---atcatt |
46161898 |
T |
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| Q |
210 |
tattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatataattatcttcttc |
278 |
Q |
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| T |
46161899 |
tattttcttgtcaaactttttctcttaacaataaacatcttcccagaacaatatataattatcttcttc |
46161967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 99 - 266
Target Start/End: Original strand, 46169121 - 46169285
Alignment:
| Q |
99 |
cagtgctattcgttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccac |
198 |
Q |
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| T |
46169121 |
cagtgctatttgttacgaaagatctatacaagaaataaagagaagaatgcataataataagagat-ttgactaatcaaattctatgttacatgctgctac |
46169219 |
T |
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| Q |
199 |
atataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatata |
266 |
Q |
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| T |
46169220 |
atataatcatttattttcttgtcaaactttt--tcttaacgataaacattttcccagaacaatatata |
46169285 |
T |
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