View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20464_low_39 (Length: 280)

Name: NF20464_low_39
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20464_low_39
NF20464_low_39
[»] chr6 (15 HSPs)
chr6 (22-261)||(32641674-32641913)
chr6 (19-261)||(32642896-32643138)
chr6 (20-227)||(24085635-24085842)
chr6 (23-261)||(6204154-6204395)
chr6 (23-261)||(11691121-11691362)
chr6 (23-261)||(30826429-30826670)
chr6 (23-259)||(22304237-22304476)
chr6 (23-261)||(27638753-27638994)
chr6 (150-238)||(18001746-18001834)
chr6 (150-243)||(26172940-26173033)
chr6 (160-261)||(3384433-3384534)
chr6 (150-261)||(31771072-31771183)
chr6 (174-261)||(2407241-2407328)
chr6 (20-89)||(2405865-2405934)
chr6 (124-251)||(21603399-21603526)
[»] chr7 (27 HSPs)
chr7 (22-260)||(47670016-47670254)
chr7 (23-261)||(17460073-17460314)
chr7 (23-261)||(17592900-17593141)
chr7 (23-261)||(9368213-9368454)
chr7 (168-259)||(36980565-36980656)
chr7 (23-261)||(41883545-41883786)
chr7 (23-110)||(9491802-9491889)
chr7 (23-261)||(35607202-35607443)
chr7 (23-261)||(48406363-48406604)
chr7 (23-261)||(15071094-15071335)
chr7 (23-261)||(17837958-17838199)
chr7 (19-261)||(47521784-47522029)
chr7 (108-261)||(42504830-42504986)
chr7 (23-260)||(5538362-5538602)
chr7 (19-261)||(41734733-41734972)
chr7 (31-261)||(27450507-27450739)
chr7 (150-261)||(37343255-37343366)
chr7 (150-261)||(10521835-10521946)
chr7 (150-261)||(16488378-16488489)
chr7 (206-258)||(9491891-9491943)
chr7 (150-249)||(22726654-22726753)
chr7 (175-261)||(13323039-13323125)
chr7 (173-261)||(16680464-16680552)
chr7 (173-261)||(17654700-17654788)
chr7 (160-251)||(34741736-34741827)
chr7 (124-213)||(17747599-17747688)
chr7 (173-261)||(11630245-11630333)
[»] chr1 (24 HSPs)
chr1 (23-258)||(49854831-49855066)
chr1 (54-251)||(16269636-16269833)
chr1 (150-259)||(51336911-51337020)
chr1 (23-259)||(26878716-26878955)
chr1 (23-261)||(3729154-3729395)
chr1 (19-261)||(22527000-22527244)
chr1 (23-261)||(19159025-19159266)
chr1 (23-259)||(13636811-13637050)
chr1 (160-261)||(35256357-35256458)
chr1 (23-261)||(21143934-21144175)
chr1 (150-251)||(45828590-45828691)
chr1 (150-261)||(52804872-52804983)
chr1 (19-251)||(47660887-47661116)
chr1 (168-259)||(95055-95146)
chr1 (150-261)||(31780602-31780713)
chr1 (160-251)||(38120110-38120201)
chr1 (150-260)||(19522219-19522329)
chr1 (150-250)||(47505356-47505456)
chr1 (160-261)||(50617844-50617945)
chr1 (160-261)||(11196867-11196968)
chr1 (150-238)||(23273342-23273430)
chr1 (20-137)||(94916-95033)
chr1 (19-89)||(38119972-38120042)
chr1 (19-89)||(45828749-45828819)
[»] chr3 (39 HSPs)
chr3 (19-261)||(30252898-30253142)
chr3 (23-259)||(42804771-42805007)
chr3 (26-213)||(18751794-18751981)
chr3 (23-261)||(50477584-50477825)
chr3 (23-261)||(54389130-54389371)
chr3 (150-260)||(48891523-48891633)
chr3 (23-261)||(34048430-34048671)
chr3 (23-261)||(42900967-42901208)
chr3 (23-261)||(46698122-46698363)
chr3 (23-261)||(2648383-2648624)
chr3 (23-261)||(4005221-4005459)
chr3 (150-261)||(46401710-46401821)
chr3 (23-261)||(9473284-9473522)
chr3 (160-261)||(599872-599973)
chr3 (23-259)||(2271863-2272102)
chr3 (165-261)||(52388550-52388646)
chr3 (150-261)||(17562280-17562391)
chr3 (19-251)||(20353556-20353785)
chr3 (168-261)||(49141473-49141566)
chr3 (175-251)||(16646510-16646586)
chr3 (20-261)||(6928130-6928368)
chr3 (23-261)||(47070993-47071235)
chr3 (150-261)||(44232716-44232827)
chr3 (168-261)||(36130490-36130583)
chr3 (168-261)||(41615266-41615359)
chr3 (160-261)||(50214114-50214215)
chr3 (191-261)||(48565874-48565944)
chr3 (150-251)||(49266306-49266407)
chr3 (19-137)||(16861579-16861697)
chr3 (23-137)||(49141337-49141451)
chr3 (19-89)||(11380845-11380915)
chr3 (173-261)||(42759660-42759748)
chr3 (19-86)||(44232888-44232955)
chr3 (31-180)||(12672529-12672672)
chr3 (19-89)||(42759817-42759887)
chr3 (23-89)||(48565994-48566060)
chr3 (23-80)||(52388420-52388477)
chr3 (150-210)||(11380973-11381033)
chr3 (108-144)||(36130595-36130631)
[»] chr2 (16 HSPs)
chr2 (19-259)||(40538532-40538772)
chr2 (23-261)||(7416787-7417025)
chr2 (23-261)||(30493772-30494013)
chr2 (23-261)||(43536515-43536756)
chr2 (23-261)||(5354976-5355217)
chr2 (23-261)||(43981526-43981767)
chr2 (23-259)||(15834263-15834502)
chr2 (108-261)||(28471533-28471689)
chr2 (168-261)||(17423471-17423564)
chr2 (150-258)||(29398546-29398654)
chr2 (19-261)||(36653303-36653548)
chr2 (26-261)||(10825732-10825970)
chr2 (19-261)||(39950499-39950738)
chr2 (168-261)||(45431510-45431603)
chr2 (19-89)||(6637899-6637969)
chr2 (124-249)||(20067374-20067497)
[»] chr5 (15 HSPs)
chr5 (19-261)||(8699237-8699478)
chr5 (23-259)||(8577350-8577589)
chr5 (25-261)||(30708052-30708291)
chr5 (124-260)||(15939651-15939786)
chr5 (23-251)||(38407662-38407893)
chr5 (23-261)||(8474-8715)
chr5 (19-261)||(5199765-5200010)
chr5 (150-261)||(19038104-19038215)
chr5 (23-261)||(28238544-28238785)
chr5 (160-251)||(42937607-42937698)
chr5 (23-261)||(28879603-28879844)
chr5 (19-251)||(38971056-38971285)
chr5 (150-261)||(40622946-40623057)
chr5 (150-251)||(42538808-42538909)
chr5 (19-89)||(511435-511505)
[»] chr4 (31 HSPs)
chr4 (23-256)||(13624347-13624580)
chr4 (150-259)||(71944-72053)
chr4 (23-261)||(6178615-6178856)
chr4 (150-261)||(10729935-10730046)
chr4 (150-261)||(10943704-10943815)
chr4 (23-261)||(1305945-1306186)
chr4 (23-261)||(21018403-21018644)
chr4 (23-261)||(49093427-49093668)
chr4 (23-261)||(30723552-30723793)
chr4 (23-261)||(40355229-40355469)
chr4 (23-261)||(31424745-31424986)
chr4 (23-261)||(41795850-41796091)
chr4 (23-261)||(49168516-49168757)
chr4 (160-251)||(11081590-11081681)
chr4 (160-251)||(14317624-14317715)
chr4 (124-223)||(41930971-41931070)
chr4 (150-261)||(50196335-50196446)
chr4 (126-249)||(55278701-55278824)
chr4 (175-260)||(44676950-44677035)
chr4 (173-261)||(50278159-50278247)
chr4 (23-261)||(51686119-51686354)
chr4 (175-261)||(37016563-37016649)
chr4 (160-238)||(46439048-46439126)
chr4 (183-251)||(50904371-50904437)
chr4 (150-261)||(8110156-8110267)
chr4 (124-251)||(40886543-40886672)
chr4 (160-261)||(50020649-50020750)
chr4 (150-238)||(21535179-21535267)
chr4 (19-238)||(12891940-12892150)
chr4 (19-89)||(8110325-8110395)
chr4 (22-80)||(50020514-50020572)
[»] scaffold0155 (1 HSPs)
scaffold0155 (19-261)||(12355-12597)
[»] chr8 (28 HSPs)
chr8 (33-251)||(5679876-5680094)
chr8 (124-261)||(45132744-45132881)
chr8 (23-261)||(1055531-1055772)
chr8 (23-261)||(23019098-23019339)
chr8 (23-261)||(26662452-26662693)
chr8 (160-261)||(52087-52188)
chr8 (19-261)||(34819423-34819662)
chr8 (23-261)||(22307-22548)
chr8 (23-261)||(15033576-15033817)
chr8 (27-260)||(486548-486784)
chr8 (108-259)||(43214391-43214545)
chr8 (23-261)||(42482317-42482558)
chr8 (20-261)||(35554593-35554831)
chr8 (108-261)||(39831647-39831803)
chr8 (160-258)||(41243035-41243133)
chr8 (175-259)||(34367576-34367660)
chr8 (175-259)||(39604294-39604378)
chr8 (173-261)||(40075664-40075752)
chr8 (160-251)||(20859028-20859119)
chr8 (50-166)||(21176180-21176288)
chr8 (173-251)||(5301271-5301349)
chr8 (150-238)||(30761213-30761301)
chr8 (128-251)||(22500860-22500983)
chr8 (20-89)||(40075514-40075583)
chr8 (19-89)||(5301132-5301202)
chr8 (19-89)||(30761085-30761155)
chr8 (19-86)||(20859190-20859257)
chr8 (198-251)||(21176302-21176355)
[»] scaffold0117 (1 HSPs)
scaffold0117 (176-251)||(22256-22331)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 32641674 - 32641913
Alignment:
Q  22 ctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtc 121  Q
    |||||||||||||||||| || ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32641674 ctggtgcctcctcctcggtctctggcctcgcctcctggtaatgatcggcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtc 32641773  T
Q  122 atgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  32641774 atgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctccc 32641873  T
Q  222 actgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32641874 actgctctgcaatgatccgctcctcatttggaggcctcgg 32641913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 32643138 - 32642896
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    ||||||||||||||||||| |||| | | | |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  32643138 ctgctggtgcctcctcctcagcctctagcctcgcctcatggtaatgatcggcgcgatctgctgcctaacatcatgcaaggccacatacaactgccgaggg 32643039  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| ||||    
T  32643038 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccactaaccatgtcataggtatcaggggagcttctcgcctcgtaccgct 32642939  T
Q  219 cccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  32642938 cccactgctctgcaatgatctgctcctcatttggaggcctcgg 32642896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 24085635 - 24085842
Alignment:
Q  20 tgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgagggg 119  Q
    |||||||| |||||||||||||| ||| | |||||||  ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| |    
T  24085635 tgctggtggctcctcctcggcctctggcctcgcctccaagtaatgatcggcgcaatctgctgcctaacatcatgcaaggccgcataaaactgctgaggtg 24085734  T
Q  120 tcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| |||||||||||||||  ||||||||||| ||| |||||    
T  24085735 tcatgctcatcacctcctgacccaaaaactcatcagcatgggcaataacgccagtaaccatatcataggtatcaggcaagcttctcgccttgtaccgctc 24085834  T
Q  220 ccactgct 227  Q
    ||||||||    
T  24085835 ccactgct 24085842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 6204395 - 6204154
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  6204395 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 6204296  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  6204295 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 6204196  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  6204195 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 6204154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 11691362 - 11691121
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  11691362 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 11691263  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  11691262 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 11691163  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  11691162 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 11691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 30826429 - 30826670
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  30826429 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 30826528  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  30826529 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 30826628  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  30826629 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 30826670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 22304476 - 22304237
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  22304476 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 22304377  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  22304376 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 22304277  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||| |||||||||||| |||| ||||||| |||||||    
T  22304276 ccactggtctgcaatgatctgctcttcatttgcaggcctc 22304237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 27638994 - 27638753
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  27638994 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 27638895  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | |||||||||||| || |||||||||||||| |||||||  ||||||||||| || ||||     
T  27638894 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacaacgccactgaccatgtcataggtgtcaggcgaacttctcgcctcataccgctg 27638795  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  27638794 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 27638753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 18001746 - 18001834
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatc 238  Q
    ||||||| | ||||||| ||||| |||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||| ||||||||    
T  18001746 catcagcgtaggcaacatcgccgttaaccatgtcataggtatcaagcgagcttctcgccttgtaccgctcccactgctctacaatgatc 18001834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 26173033 - 26172940
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctc 243  Q
    ||||||| | |||||||||| | ||||||||||||||||| ||||| | |||||||||||| || ||||||||||||| |||||||||| ||||    
T  26173033 catcagcgtaggcaacaacggcactaaccatgtcataggtgtcaggtgagcttctcgcctcataccgctcccactgctgtgcaatgatctgctc 26172940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 3384534 - 3384433
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||||||  | ||||||||||||||||| ||||||  ||||||||||||||| |||||||||| ||||| ||||||  |||| |||||||  ||||||    
T  3384534 ggcaacaacaacactaaccatgtcataggtgtcaggccagcttctcgcctcgtatcgctcccactactctgaaatgatttgctcttcatttgctggcctc 3384435  T
Q  260 gg 261  Q
    ||    
T  3384434 gg 3384433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 31771183 - 31771072
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||||| | ||||||||||||||| ||| ||| | ||||| |||| ||  |||||||||||| |||||||||| |||| |||||    
T  31771183 catcagcgtaggcaacaacgccacaaaccatgtcataggtgtcaagcgagtttctcacctcatactgctcccactgctgtgcaatgatctgctcttcatt 31771084  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  31771083 tgctggcctcgg 31771072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 2407328 - 2407241
Alignment:
Q  174 taaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||| |  |||| ||||||||| || || ||||||||||||| |||||||||| |||| |||||||  ||||||||    
T  2407328 taaccatgtcataggtgtgcggcgagcttctcgcttcataccgctcccactgctgtgcaatgatctgctcttcatttgctggcctcgg 2407241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 2405865 - 2405934
Alignment:
Q  20 tgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    ||||||||||||||||||||||| | | | ||||||||||| | |||| |||||||||||| | ||||||    
T  2405865 tgctggtgcctcctcctcggcctctagcctcgcctcctggtcaagatcggcgcgatctgctccgtaacat 2405934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 21603526 - 21603399
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccac 223  Q
    |||||||||||| ||||||||   ||||||| ||| |||||||| ||   ||| ||| |||||||||||| ||| || ||||||||||||  |||  |||    
T  21603526 gctcatcacctcttgacccaacttctcatcaacataggcaacaaagctagtaatcatctcataggtatcaagcgagcctctcgcctcgtactgctttcac 21603427  T
Q  224 tgctctgcaatgatccgctcctcatttg 251  Q
    || | | |||||||  ||||||||||||    
T  21603426 tgatgtacaatgatttgctcctcatttg 21603399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 260
Target Start/End: Original strand, 47670016 - 47670254
Alignment:
Q  22 ctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtc 121  Q
    ||||||||||||||||||||| |||   |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47670016 ctggtgcctcctcctcggcctctggcatcgcctcctggtaattatcggcgcgatctggtgcctaacatcatgcaaggccgcatacaactgctgaggggtc 47670115  T
Q  122 atgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccc 221  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  47670116 atgctcatcacctcctgacccaaaaactcatcggcatgggcaacatcgccgctaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctccc 47670215  T
Q  222 actgctctgcaatgatccgctcctcatttggaggcctcg 260  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  47670216 actgctctgcaatgatctgctcctcatttggaggcctcg 47670254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 17460073 - 17460314
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | |||||||||||  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  17460073 tggtgcctcctcctcggcctctgggctctcctcctggtaaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 17460172  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   ||||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  17460173 tgctcatgacctcctcctggcctaactgctcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 17460272  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  17460273 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 17460314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 17593141 - 17592900
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | |||||||||||  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  17593141 tggtgcctcctcctcggcctctgggctctcctcctggtaaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 17593042  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   ||||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  17593041 tgctcatgacctcctcctggcctaactgctcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 17592942  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  17592941 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 17592900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 9368213 - 9368454
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  9368213 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 9368312  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  9368313 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 9368412  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  9368413 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 9368454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 36980656 - 36980565
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  36980656 cgccgctaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctcccactgctctgcaatgatctgctcctcatttggaggcctc 36980565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 41883786 - 41883545
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  41883786 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 41883687  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  41883686 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 41883587  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  41883586 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 41883545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 9491802 - 9491889
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaact 110  Q
    |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9491802 tggtgcctcctcctcggcctttggcctcgcctcctggtaatgatcggcgcgatctgctgcctaacatcatgcaaggccgcatacaact 9491889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 35607202 - 35607443
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  35607202 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 35607301  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  35607302 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 35607401  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
     |||||||||||||||||| |||| ||||||| |||||||||    
T  35607402 tcactgctctgcaatgatctgctcttcatttgcaggcctcgg 35607443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 48406604 - 48406363
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  48406604 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 48406505  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  48406504 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 48406405  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  48406404 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 48406363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 15071094 - 15071335
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| |||   ||    || |||| || || |||||||||||||||    
T  15071094 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcttatgggtcatggcctcaaaccactgctgaggggtca 15071193  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| | || ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  15071194 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagctccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 15071293  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  15071294 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 15071335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 17838199 - 17837958
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    ||||||| |||||||||||||||| | ||||| ||||| |  |||||||||||||||| ||| | ||    || ||||  | || |||||||||||||||    
T  17838199 tggtgccccctcctcggcctttgggctcgccttctggtcaaaatcagcgcgatctgctccctcatatggctcatggcctgaaaccactgctgaggggtca 17838100  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | | ||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  17838099 tgctcatgacctcctcctggcctaagtgcgcatcagcgtagacaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 17838000  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| | || ||||||| |||||||||    
T  17837999 ccactgctctgcaatgatctgttcttcatttgcaggcctcgg 17837958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 47521784 - 47522029
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | ||||||||||| | ||   |||||||||||| ||||| ||    || ||||  | || |||| ||||||    
T  47521784 ctgctggtgcctcctcctcggcctctggcctcgcctcctggtcaagacaggcgcgatctgctccctaagatggctcatggcctaaaaccactgttgaggg 47521883  T
Q  119 gtcatgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagc 215  Q
    ||||||||| | |||||||   | || ||   ||||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |    
T  47521884 gtcatgctcgtgacctcctcctggcctaactgctcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcatacc 47521983  T
Q  216 gctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||| |||||||||| |||| |||||||  ||||||||    
T  47521984 gctcccactgctgtgcaatgatctgctcttcatttgctggcctcgg 47522029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 42504830 - 42504986
Alignment:
Q  108 actgctgaggggtcatgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttct 204  Q
    |||||||||||||||||||||| |||||||   | || ||   | ||||||| | |||||||||||| ||||||||||||||||| ||||||| ||||||    
T  42504830 actgctgaggggtcatgctcatgacctcctcctggcctaattgcgcatcagcgtaggcaacaacgccactaaccatgtcataggtgtcaggcgagcttct 42504929  T
Q  205 cgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| || ||||||||||| |||||||||||| |||| ||||||| |||||||||    
T  42504930 cgcctcataccgctcccactggtctgcaatgatctgctcttcatttgcaggcctcgg 42504986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 5538362 - 5538602
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||||| |  ||| |||||||||||| ||| | ||    || ||||  | || |||||||||||||||    
T  5538362 tggtgcctcctcctcggcctctggcctcgcctcctggtcaaaatcggcgcgatctgctccctcatatggctcatggcctgaaaccactgctgaggggtca 5538461  T
Q  123 tgctcatcacctcctga---cccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||     || ||   | ||||||| | ||||||||| || | ||||||||||||||| ||||||| |||||||||||| || |||||    
T  5538462 tgctcatgacctcctcctagcctaactgcgcatcagcgtaggcaacaacaccacaaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 5538561  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcg 260  Q
    ||||||||||||||||||| |||| |||||||  |||||||    
T  5538562 ccactgctctgcaatgatctgctcttcatttgctggcctcg 5538602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 41734972 - 41734733
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||| | ||| ||  | ||||||||||| | |||| |||||||||| | ||||||||    || ||||  | || |||||||| ||    
T  41734972 ctgctggtgcctcctccttgacctatgaactcgcctcctggtcaagatcggcgcgatctgttccctaacatgggtcatggcctgaaaccactgctgaagg 41734873  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
     |||||   | | |||||||||| | |  | ||||||| | |||||||||| | ||||||||||||||||| |||| || ||||||| ||||||| ||||    
T  41734872 ctcatg---acctcctcctgacctatatgcgcatcagcgtaggcaacaacgacactaaccatgtcataggtgtcagacgagcttctcacctcgtaccgct 41734776  T
Q  219 cccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||||||| |||| |||||||  ||||||||    
T  41734775 cccactgctctgcaatgatctgctcttcatttgctggcctcgg 41734733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 27450507 - 27450739
Alignment:
Q  31 cctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgctcatc 130  Q
    |||||||||||| ||| | ||||||||||| | |||  |||||||||||| ||||| || |  || ||||  | || ||||||||||||||||||||||     
T  27450507 cctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccctaagatgactcatggcctgaaaccactgctgaggggtcatgctcatg 27450606  T
Q  131 acctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgct 227  Q
    |||||||   | || ||   ||||| ||| | |||||||||||  ||||||||||||||||| ||||||| |||||||||||| || ||||||||||| |    
T  27450607 acctcctcctggcctaactgctcataagcttaggcaacaacgca-ctaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgtt 27450705  T
Q  228 ctgcaatgatccgctcctcatttggaggcctcgg 261  Q
     ||||||||||  ||| |||||||  ||||||||    
T  27450706 gtgcaatgatctactcttcatttgctggcctcgg 27450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 37343366 - 37343255
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||| | ||||||||||||||||| ||||||| ||||||||||| ||| ||||| |||||||||||||||||| |||| |||||    
T  37343366 catcagcgtaggcaacaacgacactaaccatgtcataggtgtcaggcgagcttctcgccttgtaccgctctcactgctctgcaatgatctgctcttcatt 37343267  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  37343266 tgctggcctcgg 37343255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 10521946 - 10521835
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||||  ||||||||||||||||| ||||||| ||||||| |||| || |||||||||||||||||||||||  |||| |||||    
T  10521946 catcagcgtaggcaacaacgctactaaccatgtcataggtgtcaggcgagcttctcacctcataccgctcccactgctctgcaatgatatgctcttcatt 10521847  T
Q  250 tggaggcctcgg 261  Q
    || ||| |||||    
T  10521846 tgcaggtctcgg 10521835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 16488489 - 16488378
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||| | ||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||| ||||||||||  ||| |||||    
T  16488489 catcagcgtaggcaacaacgacactaaccatgtcatagctatcaggcgagcttctcgcatcgtaccgctcccactgctgtgcaatgatctactcttcatt 16488390  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  16488389 tgctggcctcgg 16488378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 9491891 - 9491943
Alignment:
Q  206 gcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcct 258  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  9491891 gcctcgtaccgctcccactgctctgcaatgatctgctcctcatttggaggcct 9491943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 22726654 - 22726753
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    |||||||||  ||||||||||   | |||||||||||||||||||||| || ||||||||||||  ||| |||||| | |||||||||| ||||||||||    
T  22726654 catcagcataagcaacaacgcaagttaccatgtcataggtatcaggcgagcctctcgcctcgtactgcttccactgttgtgcaatgatcggctcctcatt 22726753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 13323125 - 13323039
Alignment:
Q  175 aaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||| ||| | | |||||||||||| || ||||||||||| | |||||||||| |||| |||||||  ||||||||    
T  13323125 aaccatgtcataggtgtcaagtgagcttctcgcctcataccgctcccactgttgtgcaatgatctgctcttcatttgctggcctcgg 13323039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 16680552 - 16680464
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||| |||| || |||||||||||| || |||| |||||| | ||||||||||  ||| |||||||  ||||||||    
T  16680552 ctaaccatgtcataggtgtcagacgagcttctcgcctcataccgcttccactgttgtgcaatgatcttctcttcatttgctggcctcgg 16680464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 17654788 - 17654700
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||| |||| || |||||||||||| || |||| |||||| | ||||||||||  ||| |||||||  ||||||||    
T  17654788 ctaaccatgtcataggtgtcagacgagcttctcgcctcataccgcttccactgttgtgcaatgatcttctcttcatttgctggcctcgg 17654700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 34741827 - 34741736
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||||| | ||||||||||||||||| |||| || |||||||||||| || | ||||||||| | ||||| |||  |||| |||||||    
T  34741827 ggcaacaacgacactaaccatgtcataggtgtcagacgagcttctcgcctcataccactcccactgttgtgcaacgatatgctcttcatttg 34741736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 17747599 - 17747688
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgta 213  Q
    |||| ||||||||||||||||   |||||||||||  | ||||||||| |||| ||| ||||| | | |||||| || ||||||||||||    
T  17747599 gctcttcacctcctgacccaactgctcatcagcataagtaacaacgccactaaacatctcataagaagcaggcgagcctctcgcctcgta 17747688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 11630245 - 11630333
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||| ||||||| |||| ||||||| || ||||| |||   | |||||||||| | || |||||||  ||||||||    
T  11630245 ctaaccatgtcataggtgtcaggcgagcttttcgcctcataccgctctcaccattgtgcaatgatctgatcttcatttgctggcctcgg 11630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 49854831 - 49855066
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | |||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49854831 tggtgcctcctcctcggcctctggcctcgcctcttggtaatgatcggcacgatctgctgcctaacatcatgcaaggccgtatacaactgctgaggggtca 49854930  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  49854931 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacatcgccactaaccatgtcataggtatcaggggagcttctcgcctcgtaccgctccca 49855030  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcct 258  Q
    |||||||||||||||  |||||||||||||||||||    
T  49855031 ctgctctgcaatgatatgctcctcatttggaggcct 49855066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 16269636 - 16269833
Alignment:
Q  54 tcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgctcatcacctcctgacccaaaaactcatc 153  Q
    ||||||| | |||| || ||||||||| |||| |||  |||||| ||||||| || || ||||||||||||||||||||||||||| |||||   |||||    
T  16269636 tcctggtcaagatcggcacgatctgctccctagcattttgcaagaccgcataaaattgttgaggggtcatgctcatcacctcctgaaccaaatgatcatc 16269735  T
Q  154 agcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||||||||||||    | |||||||||||||||||||||| |||||||||||| || |||||||||| || |||||||||| |||| |||||||    
T  16269736 agcatgggcaacaacgttagttaccatgtcataggtatcaggcgagcttctcgcctcttaccgctcccactactgtgcaatgatctgctcttcatttg 16269833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 51337020 - 51336911
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  51337020 catcagcgtaggcaacagcgccgctaaccatgtcataggtatcatgcgagcttctcgcctcgtaccgctcccactgctctgcaatgatctgctcctcatt 51336921  T
Q  250 tggaggcctc 259  Q
    ||||||||||    
T  51336920 tggaggcctc 51336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 26878955 - 26878716
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  26878955 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 26878856  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  26878855 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 26878756  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||||||||||||||| |||| ||||||| |||||||    
T  26878755 ccactgctctgcaatgatctgctcttcatttgcaggcctc 26878716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 3729154 - 3729395
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||  |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  3729154 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaattggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 3729253  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  3729254 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 3729353  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  3729354 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 3729395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 22527244 - 22527000
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | ||||||||||| | |||  |||||||||||| | ||| ||    || |||| || || |||||||||||    
T  22527244 ctgctggtgcctcctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccttaagatggctcatggcctcaaacgactgctgaggg 22527145  T
Q  119 gtcatgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagc 215  Q
    ||||||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |    
T  22527144 gtcatgctcatgacctccttctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcatacc 22527045  T
Q  216 gctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    | |||||||||||||||| |||| |||| ||||||| |||||||||    
T  22527044 gttcccactgctctgcaa-gatctgctcttcatttgcaggcctcgg 22527000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 19159266 - 19159025
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||| ||||| ||| | ||||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  19159266 tggtgcctcctcctgggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 19159167  T
Q  123 tgctcatcacctcctga---cccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||     || ||   | ||||||| | ||||||| | || ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  19159166 tgctcatgacctcctcctagcctaactgcgcatcagcgtaggcaacagcaccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 19159067  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  19159066 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 19159025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 13636811 - 13637050
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| ||| |||||||| ||| | ||    || |||| || || |||||||||||||||    
T  13636811 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgtgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 13636910  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  13636911 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 13637010  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||| |||||||||||| |||| ||||||| |||||||    
T  13637011 ccactggtctgcaatgatctgctcttcatttgcaggcctc 13637050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 35256357 - 35256458
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||| ||| |||||||||||||||||||||| ||| ||||||||||| ||| | |||||||||||||||||||||  ||||||||||||||||||||    
T  35256357 ggcaacagcgctgctaaccatgtcataggtatcatgcgagcttctcgccttgtaccactcccactgctctgcaatgatatgctcctcatttggaggcctc 35256456  T
Q  260 gg 261  Q
    ||    
T  35256457 gg 35256458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 21144175 - 21143934
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||||| |  |||||||||||||||| ||| | ||    || ||||  | || ||| ||||||||||     
T  21144175 tggtgcctcctcctcggcctctggcctcgcctcctggtcaaaatcagcgcgatctgctccctcatatggctcatggcctgaaaccactactgaggggtcg 21144076  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | |||||||||||| | ||||||||||||||| ||||||  |||||||||||| || |||||    
T  21144075 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacaacgccacaaaccatgtcataggtgtcaggcaagcttctcgcctcataccgctc 21143976  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||| |||||||||| |||| |||||||  ||||||||    
T  21143975 ccactgctgtgcaatgatctgctcttcatttgctggcctcgg 21143934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 45828691 - 45828590
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| || | ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  45828691 catcagcgtaggcaacatcggcactaaccatgtcataggtgtcaggcgagcttctcgcctcgtaccgctcccactgctctgcaatgatctgctcttcatt 45828592  T
Q  250 tg 251  Q
    ||    
T  45828591 tg 45828590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 52804983 - 52804872
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||| | ||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||| |||| |||||    
T  52804983 catcagcgtaggcaacagcgccacaaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctctgcaatgatctgctcttcatt 52804884  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  52804883 tgctggcctcgg 52804872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 47661116 - 47660887
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||| ||| ||  ||| | ||||||||||| | |||| |||||||||||| ||||||||    || ||||  | ||  ||| ||||||    
T  47661116 ctgctggtgcctcctcatcgacccatggcctcgcctcctggtcaagatcggcgcgatctgctccctaacatgggtcatggcctgaaaccgctgttgaggg 47661017  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
     |||||   | | |||||||||| | |  | ||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||| |||||||| ||||    
T  47661016 ctcatg---acctcctcctgacctatatgcgcatcagcataggcaacaacgacactaaccatgtcataggtgtcaggcgagcttcttgcctcgtaccgct 47660920  T
Q  219 cccactgctctgcaatgatccgctcctcatttg 251  Q
    |||| |||||||||||||||  ||| |||||||    
T  47660919 cccattgctctgcaatgatcttctcttcatttg 47660887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 95055 - 95146
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| || |||||||||| ||||||||||||| |||| ||||||| |||||||    
T  95055 cgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactactctgcaatgatctgctcttcatttgcaggcctc 95146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 31780602 - 31780713
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||||| ||   ||||||||||||||| ||||||| |||||||||||| || ||||||||||||||| |||||||| |||| |||||    
T  31780602 catcagcgtaggcaacaacaccataaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctctacaatgatctgctcttcatt 31780701  T
Q  250 tggaggcctcgg 261  Q
    || |||||||||    
T  31780702 tgcaggcctcgg 31780713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 38120110 - 38120201
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||| |||||||| |||| |||||||    
T  38120110 ggcaacaacgacactaaccatgtcataggtgtcaggcgagcttctcgcctcgtaccactcccactgctctacaatgatctgctcttcatttg 38120201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 19522219 - 19522329
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||||||| || ||||| ||||||| |||||||||| |||| | |||    
T  19522219 catcagcataggcaacaacggcactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctctcactgctgtgcaatgatctgctctttatt 19522318  T
Q  250 tggaggcctcg 260  Q
    ||  |||||||    
T  19522319 tgctggcctcg 19522329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 47505456 - 47505356
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||||||||| | |||||||||| |||| |||||    
T  47505456 catcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgttgtgcaatgatctgctcttcatt 47505357  T
Q  250 t 250  Q
    |    
T  47505356 t 47505356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 50617844 - 50617945
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||| |||| | ||||||||||||||| ||||||| |||||||||||| || ||||||||||| | |||||||||| |||| |||||||  ||||||    
T  50617844 ggcaacagcgccacaaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgttgtgcaatgatctgctcttcatttgctggcctc 50617943  T
Q  260 gg 261  Q
    ||    
T  50617944 gg 50617945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 11196968 - 11196867
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||| || | ||||| ||||||||||| ||||||| ||||||||||| ||| ||||||||| |||||||||||||| | || |||||||  ||||||    
T  11196968 ggcaacagcggcactaactatgtcataggtgtcaggcgagcttctcgccttgtaccgctcccacggctctgcaatgatctgatcttcatttgctggcctc 11196869  T
Q  260 gg 261  Q
    ||    
T  11196868 gg 11196867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 23273342 - 23273430
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatc 238  Q
    ||||||| | ||| |||||| | ||||||||||||||||| || |||| |||||||||||| || ||||||||||||| ||||||||||    
T  23273342 catcagcgtaggctacaacggcactaaccatgtcataggtgtctggcgagcttctcgcctcataccgctcccactgctgtgcaatgatc 23273430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 94916 - 95033
Alignment:
Q  20 tgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgagggg 119  Q
    ||||||||||||||||||||||| | | | ||||||||||| | |||  |||||||||||| ||||| ||    || ||||  | || |||| |||||||    
T  94916 tgctggtgcctcctcctcggcctctagcctcgcctcctggtcaagataggcgcgatctgctccctaagatggctcatggcctgaaaccactgttgagggg 95015  T
Q  120 tcatgctcatcacctcct 137  Q
    |||||||||| |||||||    
T  95016 tcatgctcatgacctcct 95033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 38119972 - 38120042
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||| ||||||||||||||||||||||| |  |||||||||| | |||| || ||||||| | ||||||||    
T  38119972 ctgccggtgcctcctcctcggcctttggcctagcctcctggtcaagatcggcacgatctggtccctaacat 38120042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 45828819 - 45828749
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||| ||||| ||||| | | | ||||||||||| | |||| |||||||||||| ||||||||    
T  45828819 ctgctggtgccttctccttggcctctagcctcgcctcctggtcaagatcggcgcgatctgctccctaacat 45828749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 30252898 - 30253142
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30252898 ctgctggtgcctcctcctcggcctctggcctcgcctccaggtaatgatcggcgcgatctgctgcctaacatcatgcaaggccccatacaactgctgaggg 30252997  T
Q  119 gtcatgctcatcacctcctgaccc--aaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcg 216  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||    
T  30252998 gtcatgctcatcacctcctgacccaaaaaaactcattagcatgggcaacagcgccgctaaccatgtcataggtatcaggcgagcttctagcctcgtaccg 30253097  T
Q  217 ctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||| |||||||  |||| |||||||||||||||||    
T  30253098 ctcccactgctctacaatgatatgctcttcatttggaggcctcgg 30253142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 42804771 - 42805007
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | |||||||||||||||||  ||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||    
T  42804771 tggtgcctcctcctcggcctctggcctcgcctcctggtaatgattggcgcgatctactgcctaacataatgcaaggccacatacaattgctgaggggtca 42804870  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    |||||||| |||||||||||||||||||||| |||||||||| | ||||  ||||||| |||||||||||| ||| |||||| |||||||| ||||||||    
T  42804871 tgctcatcccctcctgacccaaaaactcatcggcatgggcaatagcgccagtaaccatatcataggtatcatgcgagcttcttgcctcgtaccgctccca 42804970  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  42804971 ctgctctacaatgatctgctcctcatttggaggcctc 42805007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 18751981 - 18751794
Alignment:
Q  26 tgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgc 125  Q
    ||||||||||||||||| ||| | ||  ||||||| |||||| |||||||||||| |||||| |  ||||||  ||||||||| ||||||||||||||||    
T  18751981 tgcctcctcctcggcctctggccccgtttcctggtcatgatcggcgcgatctgcttcctaactttttgcaagatcgcatacaattgctgaggggtcatgc 18751882  T
Q  126 tcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgta 213  Q
    |||||||||||||||||||| |||||| |||||||| |||| ||||  |||||||| ||||||||||||| | | |||||||||||||    
T  18751881 tcatcacctcctgacccaaatactcattagcatgggaaacatcgccagtaaccatgacataggtatcaggtgagtttctcgcctcgta 18751794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 50477584 - 50477825
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  |||||||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  50477584 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcagcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 50477683  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  50477684 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 50477783  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  50477784 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 50477825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 54389371 - 54389130
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  54389371 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 54389272  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||||| ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  54389271 tgctcatgacctcctcctggcctaactgcgcatcagcataggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 54389172  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  54389171 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 54389130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 48891633 - 48891523
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||  |||||||||    
T  48891633 catcagcgtaggcaacaacgccgctaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctcccactgctcagcaatgatcttctcctcatt 48891534  T
Q  250 tggaggcctcg 260  Q
    |||||||||||    
T  48891533 tggaggcctcg 48891523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 34048671 - 34048430
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  34048671 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 34048572  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  34048571 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 34048472  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  34048471 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 34048430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 42900967 - 42901208
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  42900967 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 42901066  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  42901067 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 42901166  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  42901167 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 42901208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 46698122 - 46698363
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  46698122 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 46698221  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| |  |||| | |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  46698222 tgctcatgacctcctcctggcctaactgcgcatcagcgtatgcaatagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 46698321  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  46698322 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 46698363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 2648383 - 2648624
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||| ||||||||    
T  2648383 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctaaggggtca 2648482  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  2648483 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 2648582  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||| || |||||||||||| |||| ||||||| |||||||||    
T  2648583 ccattggtctgcaatgatctgctcttcatttgcaggcctcgg 2648624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 4005221 - 4005459
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| |  ||||| |||| | |||| || ||||||||| ||| | ||    || ||||  | || |||||||||||||||    
T  4005221 tggtgcctcctcctcggcctctggccttgcctcttggtcaagatcggcacgatctgctccctcatatgggtcatggcctgaaaccactgctgaggggtca 4005320  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    ||||||| ||||| ||  ||||     ||||||| | |||||||||||||||||||||||| ||||  ||||||| ||||||||||||||| ||||||||    
T  4005321 tgctcatgacctcatgggccaactgtgcatcagcgtaggcaacaacgccgctaaccatgtcgtaggcgtcaggcgagcttctcgcctcgtaccgctccca 4005420  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    | | ||| |||||||| |||| ||||||| |||||||||    
T  4005421 ccggtctacaatgatctgctcttcatttgcaggcctcgg 4005459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 46401821 - 46401710
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||| |||| |||||    
T  46401821 catcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctgccactgctctgcaatgatctgctcttcatt 46401722  T
Q  250 tggaggcctcgg 261  Q
    || |||||||||    
T  46401721 tgcaggcctcgg 46401710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 9473522 - 9473284
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||  | |||||||| || | |||| |||||||||||| ||| | ||    || ||||  | || |||||| ||||||||    
T  9473522 tggtgcctcctcctcggcctctgacctcgcctcctagtcaagatcggcgcgatctgctccctcatatgggtcatggcctgaaactactgctaaggggtca 9473423  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    ||||||| || ||||  |||||     ||||||| | ||||||| | ||||||||||| || ||||| ||||||| |||||||||||| || ||||| ||    
T  9473422 tgctcatgacatcctagcccaactgtgcatcagcgtaggcaacagcaccgctaaccatatcgtaggtgtcaggcgagcttctcgcctcataccgctctca 9473323  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||| |||| ||||||| |||||||||    
T  9473322 ctgctctgcaatgatctgctcttcatttgcaggcctcgg 9473284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 599973 - 599872
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||| || | ||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||||    
T  599973 ggcaacagcggcactaaccatgtcgtaggtgtcaggcgagcttctcgcctcgtaccgctcccactgctctgcaatgatctgctcttcatttgcaggcctc 599874  T
Q  260 gg 261  Q
    ||    
T  599873 gg 599872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 2271863 - 2272102
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | |||||||| || |  ||  ||| |||||||| ||| | ||    || |||| || || |||||||||||||||    
T  2271863 tggtgcctcctcctcggcctctgggctcgcctcctagtcaaaattggcgtgatctgcttcctcatatggctcatggcctcaaaccactgctgaggggtca 2271962  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||||| ||||||| |||| |||| |||||||||||| | ||||| |||||||||||| || |||||    
T  2271963 tgctcatgacctcctcctggcctaactgcgcatcagcataggcaacagcgccactaatcatgtcataggtgttaggcgagcttctcgcctcataccgctc 2272062  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||| |||||||||||| |||| ||||||| |||||||    
T  2272063 ccactggtctgcaatgatctgctcttcatttgcaggcctc 2272102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 261
Target Start/End: Original strand, 52388550 - 52388646
Alignment:
Q  165 caacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||  |||||||||||| |||| ||||||| |||||||||    
T  52388550 caacgccgctaaccatgtcgtaggtgtcaggcgagcttctcgcctcgtaccgctcccacttgtctgcaatgatctgctcttcatttgcaggcctcgg 52388646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 17562280 - 17562391
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||| ||| |||||||||||| || ||||||||||||| |||||||||| |||  |||||    
T  17562280 catcagcgtaggcaacaacgccactaaccatgtcataggtgtcaagcgagcttctcgcctcataccgctcccactgctttgcaatgatctgcttttcatt 17562379  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  17562380 tgctggcctcgg 17562391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 20353785 - 20353556
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | || |||||||| |||||| |||||||||||| || || ||    || ||||  | || |||| ||||||    
T  20353785 ctgctggtgcctcctcctcggcctctggcctcgtctcctggtcatgatcggcgcgatctgctccccaagatgggtcatggcctgaaaccactgatgaggg 20353686  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
     |||||   | | ||||||| || ||   | ||||||| |  ||||||||| | ||||||||||||||||| ||||||| |||||||| ||| || ||||    
T  20353685 ctcatg---acctcctcctggcctaactgcgcatcagcgtaagcaacaacgacactaaccatgtcataggtgtcaggcgagcttctcgtctcataccgct 20353589  T
Q  219 cccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||||| |||||||||| |||| |||||||    
T  20353588 cccactgctgtgcaatgatctgctcttcatttg 20353556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 49141473 - 49141566
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||| ||||||||||||||||| ||||||| ||||| |||||| || |||| ||||||||||||||||||| |||| ||||||| |||||||||    
T  49141473 cgccactaaccatgtcataggtgtcaggcgagcttcccgcctcataccgctgccactgctctgcaatgatctgctcttcatttgcaggcctcgg 49141566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 16646586 - 16646510
Alignment:
Q  175 aaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||| |||| |||||||    
T  16646586 aaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctctgcaatgatctgctcttcatttg 16646510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 6928368 - 6928130
Alignment:
Q  20 tgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgagggg 119  Q
    ||||||||| ||||||| ||| | ||| | ||||||||||| | |||| |||||||||||| |||||||  |  || ||||  | || |||||||||||     
T  6928368 tgctggtgcatcctccttggcatctggcctcgcctcctggtcaagatcggcgcgatctgctccctaacacgagtcatggcctgaaaccactgctgaggga 6928269  T
Q  120 tcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    |||||  ||||  ||||||||| |    | ||||||| | |||||| ||| | ||||||||| ||||||| |||||||  |||||| ||||||| |||||    
T  6928268 tcatga-catc--ctcctgacctatctgcgcatcagcgtaggcaactacgacactaaccatgccataggtgtcaggcgaacttctcacctcgtaccgctc 6928172  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||| |||||||||||||| |||| |||||||  ||||||||    
T  6928171 ccaccgctctgcaatgatctgctcttcatttgctggcctcgg 6928130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 47070993 - 47071235
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggcc-gcatacaactgctgaggggtc 121  Q
    |||||||||||||||||||| |||   ||||||||||| |  ||| |||||||||||| ||| | ||    || |||| | | || ||||||||||||||    
T  47070993 tggtgcctcctcctcggcctctggcatcgcctcctggtcaaaatcggcgcgatctgctccctcatatggctcatggcctgaaaaccactgctgaggggtc 47071092  T
Q  122 atgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
    |||||||| |||||||   | || ||   | |||||||   ||||||||| ||   || |||||||||| | ||||||| | |||||||||| || ||||    
T  47071093 atgctcatgacctcctcctggcctaactgcgcatcagcgcaggcaacaacaccataaaacatgtcatagatgtcaggcgagtttctcgcctcataccgct 47071192  T
Q  219 cccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||||||| |||| ||||||| |||||||||    
T  47071193 cccactgctctgcaatgatctgctcttcatttgcaggcctcgg 47071235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 44232827 - 44232716
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||| | ||||||||||||||||| ||||||| ||||||| |||| || ||||||||||| | |||||||||| |||  |||||    
T  44232827 catcagcgtaggcaacaacggcactaaccatgtcataggtgtcaggcgagcttctcacctcataccgctcccactgatgtgcaatgatctgcttttcatt 44232728  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  44232727 tgctggcctcgg 44232716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 36130583 - 36130490
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||| ||||| |||| || |||||||||||| || |||||| |||| |||||||||||  |||| ||||||| |||||||||    
T  36130583 cgccgctaaccatgtcgtaggtgtcagacgagcttctcgcctcttaccgctccaactggtctgcaatgatatgctcttcatttgcaggcctcgg 36130490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 41615359 - 41615266
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| || |||| |||||| | |||||||||| |||| |||||||  ||||||||    
T  41615359 cgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgcttccactgttgtgcaatgatctgctcttcatttgctggcctcgg 41615266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 50214114 - 50214215
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||||||||| | | ||||||||||||| | ||||| |||||||||||| || ||||||||||||| |||||||||| |||  |||||||  ||||||    
T  50214114 ggcaacaacgccacaatccatgtcataggtgttaggcgggcttctcgcctcataccgctcccactgctgtgcaatgatctgcttttcatttgctggcctc 50214213  T
Q  260 gg 261  Q
    ||    
T  50214214 gg 50214215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 48565944 - 48565874
Alignment:
Q  191 tcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||| |||| |||||||  ||||||||    
T  48565944 tcaggcgagcttctcgcctcgtactgctcccactgctctgcaatgatctgctcttcatttgctggcctcgg 48565874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 49266306 - 49266407
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||| |||||||||||||| || |||| || |||||||||||  || ||||||||||||| |||||||||  |||| |||||    
T  49266306 catcagcgtaggcaacatcgccactaaccatgtcataagtgtcagacgagcttctcgcctaataccgctcccactgctatgcaatgatttgctcttcatt 49266405  T
Q  250 tg 251  Q
    ||    
T  49266406 tg 49266407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 16861579 - 16861697
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | ||||||||| | | ||||||||| |||||||  |||| ||    || ||||  | || |||||||||||    
T  16861579 ctgctggtgcctcctcctcggcctctggcctcgcctcctgttcaagatcagcgcaatctgctctctaagatggctcatggcctgaaaccactgctgaggg 16861678  T
Q  119 gtcatgctcatcacctcct 137  Q
    ||||||||||| |||||||    
T  16861679 gtcatgctcatgacctcct 16861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 49141337 - 49141451
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  49141337 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 49141436  T
Q  123 tgctcatcacctcct 137  Q
    ||||||| |||||||    
T  49141437 tgctcatgacctcct 49141451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 11380845 - 11380915
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||||||||||| | ||| |||| || | ||||  ||||||||||| ||||||||    
T  11380845 ctgctggtgcctcctcctcggcctttggcctcgcttcctagtcaagatcgccgcgatctgctccctaacat 11380915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 42759748 - 42759660
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||| ||| |||| || |||||||||||| |  |||||||||| || |||||||||| | || |||||||  ||||||||    
T  42759748 ctaaccatgtcatgggtgtcagacgagcttctcgcctcatgccgctcccactactgtgcaatgatctgttcttcatttgctggcctcgg 42759660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 44232955 - 44232888
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaa 86  Q
    |||||||||||||||||||| ||| ||| | ||||||||||| | |||| ||||| |||||| |||||    
T  44232955 ctgctggtgcctcctcctcgacctatgggctcgcctcctggtcaagatcggcgcgttctgctccctaa 44232888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 180
Target Start/End: Complemental strand, 12672672 - 12672529
Alignment:
Q  31 cctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgctcatc 130  Q
    |||||| |||||| || | ||||||||||| || ||  | || ||||||| ||||||||  ||||||||||||||||| |||| |||      ||||||     
T  12672672 cctccttggccttcgggctcgcctcctggtcattattggtgctatctgctccctaacatggtgcaaggccgcatacaattgctcagg------gctcatt 12672579  T
Q  131 acctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccat 180  Q
    ||||||||||||||   ||||||| ||| || ||||||||  ||||||||    
T  12672578 acctcctgacccaagtgctcatcaacataggaaacaacgctactaaccat 12672529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 42759887 - 42759817
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||||||| ||| | |||||| |||| | |||| ||||||| |||| ||| ||||    
T  42759887 ctgctggtgcctcctcctcggcctctggcctcgcctcttggtcaagatcggcgcgatgtgctcccttacat 42759817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 48566060 - 48565994
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||| ||| |   ||||||||| | |||| |||||||||||| ||||||||    
T  48566060 tggtgcctcctcctcggcctctggcctaccctcctggtcaagatcggcgcgatctgctccctaacat 48565994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 52388420 - 52388477
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgct 80  Q
    |||||||||||||||||||| ||| | ||||||||||| | |||  ||||||||||||    
T  52388420 tggtgcctcctcctcggcctctggcctcgcctcctggtcaagattggcgcgatctgct 52388477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 11380973 - 11381033
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctc 210  Q
    ||||||| | |||||||||| | ||||||||||||||||| | ||||| ||||| ||||||    
T  11380973 catcagcgtaggcaacaacggcactaaccatgtcataggtgttaggcgagcttcacgcctc 11381033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 36130631 - 36130595
Alignment:
Q  108 actgctgaggggtcatgctcatcacctcctgacccaa 144  Q
    |||||||||||||||||||||| |||||||| |||||    
T  36130631 actgctgaggggtcatgctcatgacctcctggcccaa 36130595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 40538772 - 40538532
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | ||||| |||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||    
T  40538772 ctgctggtgcctcctcctcggcctctggcctcgcctactggtaatgatcggtgcgatctgctgcctaacatcatgcaaagccgcatacaactgctgaggg 40538673  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||| |||| | ||| | ||||||||||||| ||||    
T  40538672 gtcatgctcatcacctcctaacccaaaaactcatcagcatgggcaacaacgccgctaacattgtcataagtataaagcgagtttctcgcctcgtatcgct 40538573  T
Q  219 cccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  40538572 cccactgctctgcattgatctgctcctcatttggaggcctc 40538532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 7417025 - 7416787
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7417025 tggtgcctcctcctcggcctctggcctcgcctcctgataatgatcggcgcgatttgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 7416926  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    |||||||||||||||||| |||||| |||||||||||||||||| ||||  |||| || |||||||||||||||| ||||||||||||||| ||||||||    
T  7416925 tgctcatcacctcctgacacaaaaagtcatcagcatgggcaacatcgccagtaactatatcataggtatcaggcgagcttctcgcctcgtaccgctccca 7416826  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    || ||||||||||||  ||||||||||||||||||||||    
T  7416825 ctactctgcaatgatttgctcctcatttggaggcctcgg 7416787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 30493772 - 30494013
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  30493772 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 30493871  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  30493872 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 30493971  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  30493972 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 30494013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 43536515 - 43536756
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    ||||||||||||||| |||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  43536515 tggtgcctcctcctcagcctctggactctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 43536614  T
Q  123 tgctcatcacctcctga---cccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| ||||||| |   || ||   | ||||||| | |||||||||||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  43536615 tgctcatgacctcctcatggcctaactgcgcatcagcgtaggcaacaacgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 43536714  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  43536715 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 43536756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 5355217 - 5354976
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    ||||||||| |||||||||| | | | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  5355217 tggtgcctcatcctcggcctctaggctctcctcctggtcaaaatcggcgcgatctgctcccttatatgggtcatggcctcataccactgctgaggggtca 5355118  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  5355117 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 5355018  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  5355017 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 5354976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 43981767 - 43981526
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    ||||| |||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  43981767 tggtgtctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 43981668  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  43981667 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 43981568  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| | || ||||||| |||||||||    
T  43981567 ccactgctctgcaatgatctgttcttcatttgcaggcctcgg 43981526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 15834502 - 15834263
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||     | |||| || || |||||||||||||||    
T  15834502 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggttatggcctcaaacgactgctgaggggtca 15834403  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| | |||||||||| || ||||     
T  15834402 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagtttctcgcctcataccgctg 15834303  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||||||||||||||| |||| ||||||| |||||||    
T  15834302 ccactgctctgcaatgatctgctcttcatttgcaggcctc 15834263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 28471689 - 28471533
Alignment:
Q  108 actgctgaggggtcatgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttct 204  Q
    |||||||||||||||||||||| |||||||   | || ||   | ||||| | | ||||||| |||| ||||||||||||||||| ||||||| ||||||    
T  28471689 actgctgaggggtcatgctcatgacctcctcctggcctaactgcgcatcaacgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttct 28471590  T
Q  205 cgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| || |||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  28471589 cgcctcataccgctcccactgctctgcaatgatctgctcttcatttgcaggtctcgg 28471533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 17423564 - 17423471
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||| |||| ||||||| |||||||||    
T  17423564 cgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctgccactgctctgcaatgatctgctcttcatttgcaggcctcgg 17423471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 29398546 - 29398654
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||||  ||||||||||||||| ||||||| |||||||||||| || ||||||||| |||||||||||||| |||| |||||    
T  29398546 catcagcgtaggcaacagcgccgtaaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccaccgctctgcaatgatctgctcttcatt 29398645  T
Q  250 tggaggcct 258  Q
    || ||||||    
T  29398646 tgcaggcct 29398654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 36653303 - 36653548
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| | | | ||||||||||| | |||||||| |||||||| || || ||    || ||||  | || |||||||||||    
T  36653303 ctgctggtgcctcctcctcggcctctagcctcgcctcctggtcaagatcagcgagatctgctcccaaagatggctcatggcctgaaaccactgctgaggg 36653402  T
Q  119 gtcatgctcat---cacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagc 215  Q
    |||||| ||||   | |||| || || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||| ||| || |    
T  36653403 gtcatgatcatgttctcctcttggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgtctcctacc 36653502  T
Q  216 gctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||| | |||||||||| |||| ||| |||  ||||||||    
T  36653503 gctcccactgttgtgcaatgatctgctcttcaattgctggcctcgg 36653548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 261
Target Start/End: Original strand, 10825732 - 10825970
Alignment:
Q  26 tgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgc 125  Q
    ||||||||||||||||| ||||| ||||||||||| |  |||| ||||||||||| ||| | ||    || ||||  | || ||||||||||||||||||    
T  10825732 tgcctcctcctcggcctctggtctcgcctcctggtcaaaatcaacgcgatctgctccctcatatggctcatggcctgaaaccactgctgaggggtcatgc 10825831  T
Q  126 tcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
     ||| | |||||   | || ||   | ||||| | | ||||||||| ||   ||||||||||||||| ||||| | |||||||||||| || |||| |||    
T  10825832 ccatgaactcctcttggcctaactgcgcatcaacgtaggcaacaacaccataaaccatgtcataggtgtcaggtgagcttctcgcctcataccgcttcca 10825931  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||| |||| ||||||| |||||||||    
T  10825932 ctgctctgcaatgatctgctcttcatttgcaggcctcgg 10825970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 39950738 - 39950499
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| |||   ||||||||||| |  ||| |||||||||||| ||| | ||    || ||||  | |  |||||||||||    
T  39950738 ctgctggtgcctcctcctcggcctctgggttcgcctcctggtcaaaatcggcgcgatctgctccctcatatggctcatggcctgaaatcactgctgaggg 39950639  T
Q  119 gtcatgctcatcacctcctga---cccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagc 215  Q
    ||||||||||| |||||||     || ||   | ||||||| | |||||||||||| ||||||||||||||||| |||| || ||||||||||||         
T  39950638 gtcatgctcatgacctcctcctagcctaactgcgcatcagcgtaggcaacaacgccactaaccatgtcataggtgtcagacgagcttctcgcctc----- 39950544  T
Q  216 gctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
      ||||||||||||||||||||| |||| ||||||| |||||||||    
T  39950543 -atcccactgctctgcaatgatctgctcttcatttgcaggcctcgg 39950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 45431603 - 45431510
Alignment:
Q  168 cgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||| ||||||||||||||||| ||||||| |||||||||||| || |||| ||| || |||||||||||| |||| ||||||| |||||||||    
T  45431603 cgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctaccaatgatctgcaatgatctgctcttcatttgcaggcctcgg 45431510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 6637899 - 6637969
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||||||| ||||| | ||||||||| |  ||| |||||||||||| ||||||||    
T  6637899 ctgctggtgcctcctcctcggcctctggtctcccctcctggtcaatatcggcgcgatctgctccctaacat 6637969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 20067374 - 20067497
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccac 223  Q
    |||||||||||||||||||||   ||||||| ||| || |||||| ||  | |||| ||||||||||||||||| ||  ||| ||||| |  ||||||||    
T  20067374 gctcatcacctcctgacccaactgctcatcaacataggaaacaactccaattaccacgtcataggtatcaggcgagc--ctcacctcgcattgctcccac 20067471  T
Q  224 tgctctgcaatgatccgctcctcatt 249  Q
    |||| ||||||||||  |||||||||    
T  20067472 tgctgtgcaatgatcttctcctcatt 20067497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 8699237 - 8699478
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | |||||| |||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8699237 ctgctggtgcctcctcctcggcctctggcctcgcctcttggtaatgactggcgcgatccgctgcctaacatcatgcaaggccgcatacaactgctgaggg 8699336  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  8699337 gtcatgctcatcacctcctgaccc-aaaactcatcagcatcggcaacagcgccgctaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgct 8699435  T
Q  219 cccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||| |||| ||||| || ||||||| |||||||||||    
T  8699436 cccactgctatgcagtgatctgcacctcattaggaggcctcgg 8699478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 8577350 - 8577589
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||||||| | ||||||||||| |  ||| || |||| |||| ||| | ||    || |||| || || |||| ||||||||||    
T  8577350 tggtgcctcctcctcggcctttgggctcgcctcctggtcaaaatcggcacgatttgctccctcatatgggtcatggcctcaaaccactgttgaggggtca 8577449  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | |||||||||||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  8577450 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacaacgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 8577549  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||||| |||||||||| |||| ||||||| |||||||    
T  8577550 ccactgctgtgcaatgatctgctcttcatttgcaggcctc 8577589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 261
Target Start/End: Complemental strand, 30708291 - 30708052
Alignment:
Q  25 gtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatg 124  Q
    |||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||||    
T  30708291 gtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtcatg 30708192  T
Q  125 ctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccc 221  Q
    ||||| |||||||   | || ||   | ||||||||| ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||||||    
T  30708191 ctcatgacctcctcctggcctaactgcgcatcagcataggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctccc 30708092  T
Q  222 actgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||| |||||||||||| |||| | ||||| |||||||||    
T  30708091 actggtctgcaatgatctgctctttatttgcaggcctcgg 30708052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 15939786 - 15939651
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccac 223  Q
    |||||||||||||||||||||  |||||||| ||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||  ||     
T  15939786 gctcatcacctcctgacccaactactcatcaacataggcaacaacgcctctaaccatgtcataggtatcatgcgagcttctcgcctcgtaccgct-tcat 15939688  T
Q  224 tgctctgcaatgatccgctcctcatttggaggcctcg 260  Q
    ||||||  ||||||| ||||||||||||  |||||||    
T  15939687 tgctctttaatgatctgctcctcatttgctggcctcg 15939651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 38407662 - 38407893
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||||| |  ||| |||||||||||| ||| | ||    || ||||  | || |||||||||||||||    
T  38407662 tggtgcctcctcctcggcctatggcctcgcctcctggtcaaaatcggcgcgatctgctccctcatatggctcatggcctgaaaccactgctgaggggtca 38407761  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | |||||||||||| | ||||||||||||||| ||||||| |||||||||||| || |||||    
T  38407762 tgctcatgacctcctcttggcctaactgcgcatcagcgtaggcaacaacgccacaaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 38407861  T
Q  220 ccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||| |||||||| | |||| |||||||    
T  38407862 ccactgctgtgcaatgacctgctcttcatttg 38407893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 8474 - 8715
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||| ||||||||||    
T  8474 tggtgcctcctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgttgaggggtca 8573  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| |||||||||||| |||| ||||||| |||||||||||| || |||||    
T  8574 tgctcataacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcacaggtgtcaggcgagcttctcgcctcataccgctc 8673  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||| |  ||||||| |||| ||||||| |||||||||    
T  8674 ccactgctattgaatgatctgctcttcatttgcaggcctcgg 8715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 5200010 - 5199765
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| |||   ||||||||||| | |||| |||||||||||| ||||| ||    || | ||  | || |||||||||||    
T  5200010 ctgctggtgcctcctcctcggcctctggcttcgcctcctggtcaagatcggcgcgatctgctccctaagatggctcatgacctgaaaccactgctgaggg 5199911  T
Q  119 gtcatgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagc 215  Q
     |||||||||| |||||||   | || ||   | ||||||| | | ||||  |||| ||||||||||||||||| ||||||| |||||||||||| || |    
T  5199910 ctcatgctcatgacctcctcctggcctaactgcgcatcagcgtagacaacggcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcatacc 5199811  T
Q  216 gctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||| |||||||||| |||| |||||||  ||||||||    
T  5199810 gctcccactgctatgcaatgatctgctcttcatttgctggcctcgg 5199765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 19038104 - 19038215
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||| |||| |||||    
T  19038104 catcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctgccactgctctgcaatgatctgctcttcatt 19038203  T
Q  250 tggaggcctcgg 261  Q
    || |||||||||    
T  19038204 tgcaggcctcgg 19038215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 28238544 - 28238785
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    ||||||||||||| |||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || ||||||||||| |||    
T  28238544 tggtgcctcctccccggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgagggctca 28238643  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  28238644 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 28238743  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||| ||||||| |||| ||||||| |||||||||    
T  28238744 ccactgctctgtaatgatctgctcttcatttgcaggcctcgg 28238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 42937607 - 42937698
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||| || | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  42937607 ggcaacagcggcactaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctcccactgctctgcaatgatatgctcctcatttg 42937698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 28879844 - 28879603
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  28879844 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatggatcatggcctcaaaccactgctgaggggtca 28879745  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | || ||||||||| ||||||||||| ||||| |||| || | ||||| |||| || |||||    
T  28879744 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggtaacaacgccactaaccatgtcgtaggtgtcagacgagtttctcacctcataccgctc 28879645  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| |||||||||||| |||  ||||||| |||||||||    
T  28879644 ccactggtctgcaatgatctgctattcatttgcaggcctcgg 28879603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 38971285 - 38971056
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    ||||| |||||||||||||||||||||| | |||||| |||| | |||| |||||||||||| ||||||||    || ||||  | || |||| ||||||    
T  38971285 ctgctcgtgcctcctcctcggcctttggcctcgcctcttggtcaagatcggcgcgatctgctccctaacatgggtcatggcctgaaaccactgttgaggg 38971186  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
     |||||  |    |||||||||| |    | ||||||| | |||||||||| | ||||||||||||||||| |||| || ||||||||| || || ||||    
T  38971185 ctcatggcct---cctcctgacctatctgcgcatcagcgtaggcaacaacggcactaaccatgtcataggtgtcagacgagcttctcgcttcatatcgct 38971089  T
Q  219 cccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||||||||||||||  |||| |||||||    
T  38971088 cccactgctctgcaatgatttgctcttcatttg 38971056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 40622946 - 40623057
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    |||| |||| ||||||||| | ||||||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||||| |||||||  | ||||||||    
T  40622946 catctgcataggcaacaacactgctaaccatgtcatatgtatcaagcgagcttctcgcctcgtaccgctctcactgctcttcaatgatatgttcctcatt 40623045  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  40623046 tgctggcctcgg 40623057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 42538909 - 42538808
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| || | |||||||||||||  || ||||| | ||||||||||||||| |||| |||||||||| |||||||| |||| |||||    
T  42538909 catcagcgtaggcaacagcgacactaaccatgtcatttgtgtcaggagagcttctcgcctcgtaccgcttccactgctctacaatgatctgctcttcatt 42538810  T
Q  250 tg 251  Q
    ||    
T  42538809 tg 42538808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 511435 - 511505
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    ||||||||||| |||||||||||||||| | ||||||||||| | |||| | ||||||| || ||||||||    
T  511435 ctgctggtgccacctcctcggcctttggcctcgcctcctggtcaagatcggtgcgatctactccctaacat 511505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 13624347 - 13624580
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||| | ||| | ||||||||||||||||||  ||| |||||||  |||| | ||||||||||||||| |||||||||||||||||    
T  13624347 tggtgcctcctcctcggcatctggcctcgcctcctggtaatgatcgacgcaatctgctttctaataccatgcaaggccgcatccaactgctgaggggtca 13624446  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| ||| ||||||||||||||| ||||||||    
T  13624447 tgctcatcacctcctgacccaaaaactcatcagcatgcgcaacaacgccactaaccatatcataggtatcatgcgagcttctcgcctcgtaccgctccca 13624546  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggc 256  Q
    |||||||||||||||| |||||||||||||||||    
T  13624547 ctgctctgcaatgatctgctcctcatttggaggc 13624580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 72053 - 71944
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  72053 catcagcataggcaacaacgccgctaaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctcccactactctgcaatgatctgctcctcatt 71954  T
Q  250 tggaggcctc 259  Q
    ||||||||||    
T  71953 tggaggcctc 71944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 6178615 - 6178856
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  6178615 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 6178714  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  6178715 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 6178814  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  6178815 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 6178856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 10729935 - 10730046
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  10729935 catcagcgtaggcaacaacgccgctaaccatgtcataggtatcaggcgagcttctcgccttgtaccgctcccactgctctgcaatgatctgctcctcatt 10730034  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  10730035 tgctggcctcgg 10730046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 10943704 - 10943815
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  10943704 catcagcgtaggcaacaacgccgctaaccatgtcataggtatcaggcgagcttctcgccttgtaccgctcccactgctctgcaatgatctgctcctcatt 10943803  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  10943804 tgctggcctcgg 10943815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 1305945 - 1306186
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  1305945 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 1306044  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  1306045 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcttaccgctg 1306144  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||||||  ||| ||||||| |||||||||    
T  1306145 ccactgctctgcaatgatcttctcttcatttgcaggcctcgg 1306186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 21018403 - 21018644
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  21018403 tggtgcctcctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 21018502  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| ||||  |||||||||||||||| ||||||| |||||||||||| || |||||    
T  21018503 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccattaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 21018602  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||| ||||||||||||| |||| ||||||| |||||||||    
T  21018603 ccactactctgcaatgatctgctcttcatttgcaggcctcgg 21018644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 49093668 - 49093427
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    ||||||||||||||| |||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  49093668 tggtgcctcctcctcagcctctgggctctcctcctggtcagaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 49093569  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  49093568 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 49093469  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  49093468 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 49093427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 30723552 - 30723793
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  30723552 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 30723651  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  30723652 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 30723751  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| |||||||||||| |||| ||||||  |||||||||    
T  30723752 ccactggtctgcaatgatctgctcttcatttacaggcctcgg 30723793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 40355229 - 40355469
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  40355229 tggtgcctcctcctcggcctatgggctctcctcctggtcaaaatcggcgcgatctgct-cctcatatgggtcatggcctcaaaccactgctgaggggtca 40355327  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | |||||||||||| ||||||||||||||||| ||||||| |||||||||||| || |||||    
T  40355328 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacaacgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctc 40355427  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| |||||||||||| |||| ||||||| ||| |||||    
T  40355428 ccactggtctgcaatgatctgctcttcatttgcaggtctcgg 40355469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 31424986 - 31424745
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| ||| |||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  31424986 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgtgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 31424887  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| |||||||||||| |||| |||| || |||||||||||| || ||||     
T  31424886 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcacaggtgtcagacgagcttctcgcctcataccgctg 31424787  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  31424786 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 31424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 41795850 - 41796091
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||| ||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||| ||||||||||    
T  41795850 tggtgcctccgcctcggcctctgggctctcctcctggtcagaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgttgaggggtca 41795949  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  41795950 tgctcatgacctcctcttggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 41796049  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  41796050 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 41796091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 49168757 - 49168516
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  |||  ||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  49168757 tggtgcctcctcctcggcctatgggctctcctcctggtcaaaatcgacgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 49168658  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||| ||||||| ||||||| |||||||||||| || ||||     
T  49168657 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgccataggtgtcaggcgagcttctcgcctcataccgctg 49168558  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  49168557 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 49168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 11081590 - 11081681
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||| |||| |||||||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||| || | |||||||    
T  11081590 ggcaacatcgccactaaccatgtcacaggtatcaggcgagcttctcgcctcgtaccgcccccactgctctgcaatgatctgcccttcatttg 11081681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 14317715 - 14317624
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||| | |||||||| ||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||    
T  14317715 ggcaacagcaccgctaacaatgtcataggtatcacgcgagcttctcgcctcgtaccgctcacactgctctgcaataatctgctcctcatttg 14317624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 41930971 - 41931070
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccac 223  Q
    |||||||||||||| ||||||   ||||||| |||  |||||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||    
T  41930971 gctcatcacctcctaacccaactgctcatcaacataagcaacaacgccgctaaccatgtcacaagtatcaggcgagcttctcgcctcgtaccgctcccac 41931070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 50196446 - 50196335
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||| | ||||||| || | ||||||||||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||| |||| |||||    
T  50196446 catcagcgtaggcaacagcggcactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctgtgcaatgatctgctcttcatt 50196347  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  50196346 tgctggcctcgg 50196335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 55278701 - 55278824
Alignment:
Q  126 tcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactg 225  Q
    ||||||||||||||||||    ||||||||||| ||||||||| || |||||||||||||| |||||||||| || ||||||||||||   |||||||||    
T  55278701 tcatcacctcctgacccatctgctcatcagcataggcaacaacaccactaaccatgtcataagtatcaggcgagcctctcgcctcgtactactcccactg 55278800  T
Q  226 ctctgcaatgatccgctcctcatt 249  Q
     | |||||||||  ||||||||||    
T  55278801 ttgtgcaatgatttgctcctcatt 55278824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 44676950 - 44677035
Alignment:
Q  175 aaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcg 260  Q
    ||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||| |||| ||||||  ||||||||    
T  44676950 aaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctctgcaatgatctgctcttcatttacaggcctcg 44677035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 50278247 - 50278159
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||| |||| |||||||  ||||||||    
T  50278247 ctaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctgtgcaatgatctgctcttcatttgctggcctcgg 50278159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 51686354 - 51686119
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | |||||| |||| | |||| |||||||||||| ||||||||    || ||||  | || |||| |||||| | |    
T  51686354 tggtgcctcctcctcggcctctggcctcgcctcatggtcaagatcggcgcgatctgctccctaacatgggtcatggcctaaaaccactgttgagggctta 51686255  T
Q  123 tgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctccca 222  Q
    ||   | | ||||||| || ||   | ||||||| | ||||||| || | ||||||||||||||||| ||||||| |||||||||||| || ||||||||    
T  51686254 tg---acctcctcctggcctaactgcgcatcagcgtaggcaacagcggcactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctccca 51686158  T
Q  223 ctgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||| | |||||||||| |||| |||||||  ||||||||    
T  51686157 ctgttgtgcaatgatctgctcttcatttgttggcctcgg 51686119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 37016563 - 37016649
Alignment:
Q  175 aaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||| ||||||| |||||||||||| || ||||  |||||||||||||||||| |||| ||||||| |||||||||    
T  37016563 aaccatgtcataggtgtcaggcgagcttctcgcctcataccgctttcactgctctgcaatgatctgctcttcatttgcaggcctcgg 37016649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 46439126 - 46439048
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatc 238  Q
    |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||| ||||||||    
T  46439126 ggcaacaacgacactaaccatgtcataggtgtcaggcgagcttctcgcctcgtaccgcttccactgctctacaatgatc 46439048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 50904437 - 50904371
Alignment:
Q  183 cataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  50904437 cataggtatcaggcgagcttctcgcctcgtaccgctcccactgctctgcaatgat--gctcctcatttg 50904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 8110267 - 8110156
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatt 249  Q
    ||||||||| ||||||| || | | ||  ||||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||| |||| |||||    
T  8110267 catcagcataggcaacagcggcacgaaatatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctgtgcaatgatctgctcttcatt 8110168  T
Q  250 tggaggcctcgg 261  Q
    ||  ||||||||    
T  8110167 tgctggcctcgg 8110156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 124 - 251
Target Start/End: Original strand, 40886543 - 40886672
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgta--gcgctccc 221  Q
    ||||||||||| |||||| ||   ||||||||||| ||||||||||||  ||| ||| ||||| |||||| | | || ||||||||||||  ||||||||    
T  40886543 gctcatcaccttctgacctaattgctcatcagcataggcaacaacgccattaatcatctcataagtatcaagagagcctctcgcctcgtaccgcgctccc 40886642  T
Q  222 actgctctgcaatgatccgctcctcatttg 251  Q
    |||| | |||||||||| ||||||||||||    
T  40886643 actggtgtgcaatgatctgctcctcatttg 40886672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 50020649 - 50020750
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||| || | ||||||||||||||||| ||||||  |||||||||||| || ||||||||||| | |||||||||| |||| |||||||  ||||||    
T  50020649 ggcaacagcggcactaaccatgtcataggtgtcaggcaagcttctcgcctcataccgctcccactgttatgcaatgatctgctcttcatttgctggcctc 50020748  T
Q  260 gg 261  Q
    ||    
T  50020749 gg 50020750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 21535179 - 21535267
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatc 238  Q
    ||||||| | ||||||| || | ||||||||||||||||||||||||| |||||||||||| || ||||| ||||| | ||||||||||    
T  21535179 catcagcgtaggcaacagcggcactaaccatgtcataggtatcaggcgagcttctcgcctcataccgctctcactgttgtgcaatgatc 21535267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 12892150 - 12891940
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||| |||| |||||||||||| ||| | ||||||||||| |  ||| || |||||||||   ||||||   |||||||||||||||| |  ||||||    
T  12892150 ctgctgttgccgcctcctcggcctctggcctcgcctcctggtcaatatcggcacgatctgctcgttaacatagcgcaaggccgcatacaattattgaggg 12892051  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
          ||||||||||||| ||||| |  ||||| | |||||||||| || ||  | ||||||||||||||||   ||| |||||||||||||||  |||    
T  12892050 ------ctcatcacctcctaacccagatgctcataatcatgggcaacgactccagttaccatgtcataggtat---gcgagcttctcgcctcgtattgct 12891960  T
Q  219 cccactgctctgcaatgatc 238  Q
    ||||||| | ||||| ||||    
T  12891959 cccactgatgtgcaacgatc 12891940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 8110395 - 8110325
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||||||| ||| | | ||||||||  |  ||| |||||||||||| ||||||||    
T  8110395 ctgctggtgcctcctcctcggcctctggcctcccctcctggccaatatcggcgcgatctgctccctaacat 8110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 50020514 - 50020572
Alignment:
Q  22 ctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgct 80  Q
    |||||||||||||||| |||||||| | ||||||||||| | |||| ||||||| ||||    
T  50020514 ctggtgcctcctcctcagcctttggcctcgcctcctggtcaagatcggcgcgatttgct 50020572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 12597 - 12355
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||  | |||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  12597 ctgctggtgcctcctcctcggcctctgccctcgcctcttggtaatgatcggcgcgatctgctgtctaacatcatgcaaggacgcatacaactgctgaggg 12498  T
Q  119 gtcatgctcatcacctcct-gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgc 217  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||||  || | ||||| |||||||||||||||||  ||||||| ||||||| |||    
T  12497 gtcatgctcatcacctcgtgggcccaaaaactcatcagcatgggcaacattgcag-taaccctgtcataggtatcaggccagcttctcacctcgtaccgc 12399  T
Q  218 tcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||    
T  12398 tcccactgctctgcaatgatctgctcctcatttggtggcctcgg 12355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 5680094 - 5679876
Alignment:
Q  33 tcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgctcatcac 132  Q
    |||||||||| |||   |||||||| || ||||||  ||||||||||| ||||||||  |||||||||||||| || || ||||||||||||||||||||    
T  5680094 tcctcggcctctggcttcgcctcctagtcatgatcgacgcgatctgctccctaacattttgcaaggccgcataaaattgttgaggggtcatgctcatcac 5679995  T
Q  133 ctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgca 232  Q
    ||||||||||||| |||||||||||||||||||| ||||  | |||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||||    
T  5679994 ctcctgacccaaatactcatcagcatgggcaacagcgccagtgaccatgtcataggtatcaggcgagcttctcgcctcgtaccgctcccaatgctgtgca 5679895  T
Q  233 atgatccgctcctcatttg 251  Q
    ||||||  ||| |||||||    
T  5679894 atgatctcctcttcatttg 5679876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 124 - 261
Target Start/End: Complemental strand, 45132881 - 45132744
Alignment:
Q  124 gctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccac 223  Q
    ||||||||||| |||||||||   ||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||    
T  45132881 gctcatcacctgctgacccaactgctcatcagcataggcaataacgccgctaaccatgtcataggcatcaggcgagcttctcgcctcgtaccgcttccac 45132782  T
Q  224 tgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||  |||||||||||  ||||||||    
T  45132781 tgctctgcaatgatctactcctcatttgctggcctcgg 45132744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 1055772 - 1055531
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  1055772 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 1055673  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  1055672 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 1055573  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  1055572 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 1055531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 23019098 - 23019339
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  23019098 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 23019197  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  23019198 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 23019297  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  23019298 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 23019339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 26662693 - 26662452
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  26662693 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 26662594  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || ||||     
T  26662593 tgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctg 26662494  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  26662493 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 26662452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 52188 - 52087
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||    
T  52188 ggcaacaacgccgctaaccatgtcatagatatcaggtgagcttctcgcctcgtaccgctcccactgctctgcaatgatctgcttctcatttggaggcctc 52089  T
Q  260 gg 261  Q
    ||    
T  52088 gg 52087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 34819423 - 34819662
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggg 118  Q
    |||||||||||||||||||||||| ||| | ||||||||||| | |||| |||||||||||| ||||||||     | ||||  | || |||||||||||    
T  34819423 ctgctggtgcctcctcctcggcctctggcctcgcctcctggtcaagatcggcgcgatctgctccctaacatgggttatggcctgaaaccactgctgaggg 34819522  T
Q  119 gtcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgct 218  Q
     |||||   | | |||||||||| |    |  |||||| | |||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  34819523 ctcatg---acctcctcctgacctatctgcgtatcagcgtaggcaacaacggcactaaccatgtcataggtgtcaggcgagcttctcgcctcgtaccgct 34819619  T
Q  219 cccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||||||| |||| |||||||  ||||||||    
T  34819620 cccactgctctgcaatgatctgctcttcatttgctggcctcgg 34819662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 22307 - 22548
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||||||| | | ||||| ||| |  ||| |||||||||||| ||| | ||    || |||| ||||| |||||||||||||||    
T  22307 tggtgcctcctcctcggcctttgggctctcctccaggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgaggggtca 22406  T
Q  123 tgctcatcacctcctgacccaaaaact---catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||  ||    ||||   ||||||| | ||||||| |||| ||||||||||||||||| ||||||| || ||||||||| || ||||     
T  22407 tgctcatgacctcctccccgcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcctctcgcctcataccgctg 22506  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  22507 ccactgctctgcaatgatctgctcttcatttgcaggcctcgg 22548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 15033576 - 15033817
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | ||||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || ||| |||||||||||    
T  15033576 tggtgcctcctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactactgaggggtca 15033675  T
Q  123 tgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| ||  ||||    
T  15033676 tgctcatgacctcctcctggcctaattgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcatactgctc 15033775  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| |||||||||||| |||| ||||||| |||||||||    
T  15033776 ccactgatctgcaatgatctgctcttcatttgcaggcctcgg 15033817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 486548 - 486784
Alignment:
Q  27 gcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgct 126  Q
    |||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| ||||| ||||||| |||||||||||    
T  486548 gcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcataccactgctgtggggtcatgct 486647  T
Q  127 catcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccac 223  Q
    ||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||||||||| || |||| ||||    
T  486648 catgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctgccac 486747  T
Q  224 tgctctgcaatgatccgctcctcatttggaggcctcg 260  Q
    ||||||||||||||| |||| ||||||| ||||||||    
T  486748 tgctctgcaatgatctgctcttcatttgcaggcctcg 486784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 43214545 - 43214391
Alignment:
Q  108 actgctgaggggtcatgctcatcacctcct---gacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttct 204  Q
    |||||||||||||||||||||| |||||||   | || ||   | ||||||| | ||||||| |||| ||||||||||||||||||||||||| ||||||    
T  43214545 actgctgaggggtcatgctcatgacctcctcctggcctaactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtatcaggcgagcttct 43214446  T
Q  205 cgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    |||||| || ||||||||||| |||||||||||| |||| ||||||| |||||||    
T  43214445 cgcctcataccgctcccactggtctgcaatgatctgctcttcatttgcaggcctc 43214391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 42482317 - 42482558
Alignment:
Q  23 tggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtca 122  Q
    |||||||||||||||||||| ||| | | ||||||||| |  ||| |||||||||||| ||| | ||    || |||| || || |||||||||||||||    
T  42482317 tggtgcctcctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccctcatatgggtcatggcctcaaaccactgctgaggggtca 42482416  T
Q  123 tgctcatcacctcctgacccaaaaact---catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    ||||||| |||||||      | ||||   ||||||| | ||||||| |||| ||||||||||||||||| ||||||| |||| ||||||| || ||||     
T  42482417 tgctcatgacctcctcctggcataactgcgcatcagcgtaggcaacagcgccactaaccatgtcataggtgtcaggcgagcttatcgcctcataccgctg 42482516  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||||||||||||||||  ||| ||||||| |||||||||    
T  42482517 ccactgctctgcaatgatctactcttcatttgcaggcctcgg 42482558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 35554831 - 35554593
Alignment:
Q  20 tgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgagggg 119  Q
    ||||||||||||||||||||||| ||  | ||||||||||| |  ||| || ||||||||| ||||||||    || ||||  | || | |||||||||     
T  35554831 tgctggtgcctcctcctcggcctctgtcctcgcctcctggtcaaaatcggcacgatctgctccctaacatgggtcatggcctgaaaccattgctgagggc 35554732  T
Q  120 tcatgctcatcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctc 219  Q
    |||||   | | |||||||||| |    | ||||||| | |||||||||| | ||||||||||||||||| ||||||| |||||| |||||||| |||||    
T  35554731 tcatg---aactcctcctgacctatttgcgcatcagcgtaggcaacaacggcactaaccatgtcataggtgtcaggcgagcttcttgcctcgtaccgctc 35554635  T
Q  220 ccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
     |||||||||||||||||| |||| |||||||  ||||||||    
T  35554634 tcactgctctgcaatgatctgctcttcatttgctggcctcgg 35554593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 39831647 - 39831803
Alignment:
Q  108 actgctgaggggtcatgctcat---cacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttct 204  Q
    ||||||||||||||||||||||   | ||||||| || ||   ||||||||||| |||||||||||| ||||||||||||||||  ||  ||| ||||||    
T  39831647 actgctgaggggtcatgctcatggcctcctcctggcctaactgctcatcagcataggcaacaacgccactaaccatgtcataggagtccagcgagcttct 39831746  T
Q  205 cgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    |||||| || |||||||||| || |||||||||| |||| |||||||  ||||||||    
T  39831747 cgcctcataccgctcccactcctgtgcaatgatctgctcttcatttgctggcctcgg 39831803  T

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Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 41243035 - 41243133
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcct 258  Q
    ||||||| || | ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||  |||| ||||||| ||||||    
T  41243035 ggcaacagcggcactaaccatgtcataggtgtcaggcgagcttctcgcctcgtaccgctcccactgctctgcagtgatttgctcttcatttgcaggcct 41243133  T

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Target: chr8; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 34367576 - 34367660
Alignment:
Q  175 aaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||||||||||| ||||||| |||||||||||| || ||||| |||||||||||||||||| |||| ||||||| |||||||    
T  34367576 aaccatgtcataggtttcaggcgagcttctcgcctcataccgctctcactgctctgcaatgatctgctcttcatttgcaggcctc 34367660  T

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Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 39604378 - 39604294
Alignment:
Q  175 aaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctc 259  Q
    ||||||||||||||| ||||||| |||||||||||| || ||||| ||||||||||||||||||  ||| ||||||| |||||||    
T  39604378 aaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcacactgctctgcaatgatctactcttcatttgcaggcctc 39604294  T

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Target: chr8; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 261
Target Start/End: Original strand, 40075664 - 40075752
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttggaggcctcgg 261  Q
    ||||||||||||||||| | ||||| ||||||||||||||| ||||| |||||||||||||||||| || | |||||||  ||||||||    
T  40075664 ctaaccatgtcataggtgttaggcgagcttctcgcctcgtaccgctctcactgctctgcaatgatctgcccttcatttgctggcctcgg 40075752  T

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Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 20859119 - 20859028
Alignment:
Q  160 ggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||||| | ||||||||||||||||| |||| || |||||||||||| || ||||||||||||| ||||||||||  ||| |||||||    
T  20859119 ggcaacaacggcactaaccatgtcataggtgtcagtcgagcttctcgcctcataccgctcccactgctgtgcaatgatctactcttcatttg 20859028  T

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Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 21176180 - 21176288
Alignment:
Q  50 cgcctcctggtaatgatcagcgcgatctgctgcctaacatcatgcaaggccgcatacaactgctgaggggtcatgctcatcacctcctgacccaaaaact 149  Q
    ||||||||||| |||| | |||||||||||| ||||||||  ||||||||| ||||||        |||||||||||||||||||||||||| ||| |||    
T  21176180 cgcctcctggtcatgaacggcgcgatctgctccctaacattttgcaaggccacataca--------ggggtcatgctcatcacctcctgacctaaatact 21176271  T
Q  150 catcagcatgggcaaca 166  Q
    ||| |||||||||||||    
T  21176272 cattagcatgggcaaca 21176288  T

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Target: chr8; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 5301271 - 5301349
Alignment:
Q  173 ctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    ||||||||||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||  |||| |||||||    
T  5301271 ctaaccatgtcataggtgtcaggcgagcttctcgcctcataccgctcccactgctgtgcaatgatatgctcttcatttg 5301349  T

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Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 30761213 - 30761301
Alignment:
Q  150 catcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatc 238  Q
    ||||||| | ||||||| || | ||||||||||||||||||||||||| ||||||| |||| || |||| |||||||| || |||||||    
T  30761213 catcagcgtaggcaacagcggcactaaccatgtcataggtatcaggcgagcttctcacctcataccgcttccactgctgtgtaatgatc 30761301  T

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Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 22500983 - 22500860
Alignment:
Q  128 atcacctcctgacccaaaaactcatcagcatgggcaacaacgccgctaaccatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgct 227  Q
    |||||||| ||||||||   ||||||| ||| || || |||||| |||||||| |||||||||||||||| || |||||| | ||   |||||||||| |    
T  22500983 atcacctcttgacccaagtgctcatcatcataggaaataacgccactaaccatatcataggtatcaggcgagcctctcgcttggtgttgctcccactggt 22500884  T
Q  228 ctgcaatgatccgctcctcatttg 251  Q
     |||||||||| |||| |||||||    
T  22500883 gtgcaatgatctgctcatcatttg 22500860  T

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Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 40075514 - 40075583
Alignment:
Q  20 tgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    ||||||||||||||||||||||| ||| | |||||| |||| | |||| |||||||||||| ||||||||    
T  40075514 tgctggtgcctcctcctcggcctctggcctcgcctcatggtcaagatcggcgcgatctgctccctaacat 40075583  T

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Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 5301132 - 5301202
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||||||| ||| | |||||||| || | |||| ||||||||| || ||||||||    
T  5301132 ctgctggtgcctcctcctcggcctctggcctcgcctcctagtcaagatcggcgcgatctactccctaacat 5301202  T

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Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 30761085 - 30761155
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaacat 89  Q
    |||||||||||||||||||||||| ||| | ||||||||||  |  ||| |||||||||||| ||||||||    
T  30761085 ctgctggtgcctcctcctcggcctctggcctcgcctcctggccaatatcggcgcgatctgctccctaacat 30761155  T

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Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 20859257 - 20859190
Alignment:
Q  19 ctgctggtgcctcctcctcggcctttggtcgcgcctcctggtaatgatcagcgcgatctgctgcctaa 86  Q
    |||||||||||||||||||||||| ||| | |||||| |||| | |||| ||||||| |||| |||||    
T  20859257 ctgctggtgcctcctcctcggcctctggcctcgcctcttggtcaagatcggcgcgatttgctccctaa 20859190  T

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Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 21176302 - 21176355
Alignment:
Q  198 tgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||||||||||| ||||| ||||| | |||||||||| |||| |||||||    
T  21176302 tgcttctcgcctcgtaccgctctcactgatgtgcaatgatcggctcttcatttg 21176355  T

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Target: scaffold0117 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 22256 - 22331
Alignment:
Q  176 accatgtcataggtatcaggcgtgcttctcgcctcgtagcgctcccactgctctgcaatgatccgctcctcatttg 251  Q
    |||||||||||||||||||||| |  ||||||||||||| |||||||||||| |||||||||  ||||||||||||    
T  22256 accatgtcataggtatcaggcgagtctctcgcctcgtagtgctcccactgctgtgcaatgatatgctcctcatttg 22331  T

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