View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_4 (Length: 640)
Name: NF20464_low_4
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 325 - 630
Target Start/End: Original strand, 47561727 - 47562027
Alignment:
| Q |
325 |
ggtatgggccatgtcatccagtgctgatttggaagatagcttacgtgggaccaaatttccaattcatgcaattatcactatgcattgcatgccatatata |
424 |
Q |
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| T |
47561727 |
ggtatgggccatgtcatccattgctgatttggaagatagcttacgtgggaccaaatttccaattcatgcaattatcactatgcattgcatgccatatata |
47561826 |
T |
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| Q |
425 |
tggtaactagtaaatatataattgaaaaaattgaagtcatatcatatgatatgatatgaataatgcataaagtaattattatttaataaattaattccat |
524 |
Q |
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| T |
47561827 |
tggtaactagtaaatatataattaaaaaaattgaagtcatatcatat-----gatatgaataatgcataaagtaattattatttaataaattaattccat |
47561921 |
T |
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| Q |
525 |
atatccttccttctcattctgtgcttttcccagtgctggcatttgtcctatttttcttcagtgtctttctgtgcactctgtagtctgcagtggtctgttc |
624 |
Q |
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| T |
47561922 |
atatccttccttctcattctgtgcttttcccagtgctggcatttgtcctatttttcttcagtgtctttctgtgcactctgtagtctgcagtggtctgttc |
47562021 |
T |
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| Q |
625 |
tctctg |
630 |
Q |
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| T |
47562022 |
tctctg |
47562027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 47561453 - 47561693
Alignment:
| Q |
18 |
aagttaacaaatcatacatcatacatgatgaaagttttatcttgtgcaagaaaaagcatttgtacagttttctctgttgtgtttgacatttgagaatagt |
117 |
Q |
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| T |
47561453 |
aagttaataaatcatacatcatacatgatgaaagttttatcttgtgcaagaaaaagcatttgtacagttttctctgttgtgtttgacatttgaga----- |
47561547 |
T |
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| Q |
118 |
gagagagaagatggcaaaggttaaaattaagattgatacgatagtggtatggtataatatccgtaccatcacatatcattagatgccttgggtgctcgtg |
217 |
Q |
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| T |
47561548 |
--------agatggcaaaggttaaaattaagattgatacgatagtggtatggtataatatccgtaccatcacatatcattagatgccttgggtgctcgtg |
47561639 |
T |
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| Q |
218 |
cacctgactttgtcaagcatacaaaattgacagtgaggagtgatttgatttcat |
271 |
Q |
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| T |
47561640 |
cacctgactttgtcaagcatacaaaattgacagtgaggagtgatttgatttcat |
47561693 |
T |
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