View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_47 (Length: 253)
Name: NF20464_low_47
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_47 |
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| [»] scaffold0223 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 13384 - 13624
Alignment:
| Q |
13 |
agatgaatagtaatgagagagatagtggagaaaggtgattaagtagtgaagatgatcattggttgctcttcggttagttagctcttctctactttgtaat |
112 |
Q |
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| T |
13384 |
agatcaatagtaatgagagagatagtggagaaaggtgattaagtagtgaagatgatcattggttgctcttcggttagttagctctcctctactttgtaat |
13483 |
T |
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| Q |
113 |
gaataggagcaccatttgtactccatttctactttgtctattaatgttaaatagatgacgatgaatccttgtgaataatgtgtttagatgtcattgatta |
212 |
Q |
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| T |
13484 |
gaataggagcgccatttgtactccatttctactttgtctattaatgttaaatagatgactatgaatccttgtgaataatgtgtttagatgtcattgatta |
13583 |
T |
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| Q |
213 |
tttgaaattagtatgtcgtttattttcaattgattatgctt |
253 |
Q |
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| T |
13584 |
tttgaaattagtatgtcgtttattttcaattgattatgctt |
13624 |
T |
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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 35565040 - 35564953
Alignment:
| Q |
167 |
atgacgatgaatccttgtgaataatgtgtttagatgtcattgattatttgaaattag-tatgtcgtttattttcaattgattatgctt |
253 |
Q |
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| T |
35565040 |
atgacaatgaatccttgtgaataatatgattagatgtcattgatcatctgaaatttgttatgtcgtttattttcaattgattatgctt |
35564953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 19841708 - 19841606
Alignment:
| Q |
152 |
attaatgttaaatagatgacgatgaatccttgtgaataatgtgtttagatgtcattgattatttgaaattag-tatgtcgtttattttcaattgattatg |
250 |
Q |
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| T |
19841708 |
attaacgttgaataaatgacaatgaatccttgtgaataatgtgattagatgtcattgaacatctgaaattagttatgtcgtttattttcgtttgattatg |
19841609 |
T |
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| Q |
251 |
ctt |
253 |
Q |
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||| |
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| T |
19841608 |
ctt |
19841606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 31836352 - 31836296
Alignment:
| Q |
13 |
agatgaatagtaatgagagagatagtggagaaaggtgattaagtagtgaagatgatca |
70 |
Q |
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| T |
31836352 |
agattaatagtaatgagagagatagtggagaagggt-attgagtagagaagatgatca |
31836296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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