View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_48 (Length: 252)
Name: NF20464_low_48
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 22543872 - 22543638
Alignment:
| Q |
1 |
tcactgtctacgtatcaatattgtgtctaatgtctatgcatgagtccacacttcgtannnnnnnncttcaacatgcatctttgaaaatataggaaacaaa |
100 |
Q |
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| T |
22543872 |
tcactgtctaggtgtcaatattgtgtctaatgtctatgcatgagtccacacttcgtattttttttctttaacatgcatctttgaaaatataggaaacaaa |
22543773 |
T |
|
| Q |
101 |
tgtgttttgcaattaaaagtaaaacgcgtaaaatcattttctaaaaccaaacatttagcatgcaacgtaaaacataagcaactcatcaatgcaacaaaac |
200 |
Q |
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|||||| |||||| ||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22543772 |
tgtgttatgcaatcaaaagcaaaacacataaaataattttctaaaaccaaacatttagcatgcaacgtaaaacataagcaactcatcaatgcaacaaaac |
22543673 |
T |
|
| Q |
201 |
tatcatctcatcaaccaactctcaaaccattattt |
235 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22543672 |
catcatctcatcaaccaactctcaaaccattattt |
22543638 |
T |
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