View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_52 (Length: 239)
Name: NF20464_low_52
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 39028681 - 39028475
Alignment:
| Q |
18 |
gtttatgcattcgtcacctttgatgaaactgctcatatgtgtagactgaagattatgaaaatatttattgaataatagttcatgtcccttttcttgattc |
117 |
Q |
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| T |
39028681 |
gtttatgcattcgtcacctttgatgaaactgctcatatgtgtagactgaagattatgaaaatatttattgaataatagttcatgtccctcttcttgattc |
39028582 |
T |
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| Q |
118 |
ctctatatattccttctttgacgcctaggcctgccagcgctggggacttctcgtgtttgaatttcaacgaaaagtctgacaagtccttcatccatgttat |
217 |
Q |
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| T |
39028581 |
ctctatatattccttctttaacgcctatgcctgctagcgctggggacttcttgtgtttgaatttcaacgaaaagtctgacaagtccttcatccatgttat |
39028482 |
T |
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| Q |
218 |
cgttcat |
224 |
Q |
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||||||| |
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| T |
39028481 |
cgttcat |
39028475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 23561450 - 23561570
Alignment:
| Q |
18 |
gtttatgcattcgtcacctttgatgaaactgctcatatgtgtagactgaagattatgaaaa-tatttattgaataatagttcatgtcccttttcttgatt |
116 |
Q |
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| T |
23561450 |
gtttatgcattcgataccttagacggaactgctcatccgtgtacactggagtttctgaaaaataatcattgaataatcgctcatgtccttcttcgcgatt |
23561549 |
T |
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| Q |
117 |
cctctatatattccttctttg |
137 |
Q |
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| T |
23561550 |
cctctctatattccttctttg |
23561570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 32783543 - 32783592
Alignment:
| Q |
102 |
tcccttttcttgattcctctatatattccttctttgacgcctaggcctgc |
151 |
Q |
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| T |
32783543 |
tccctcttcatgattcctctctatattcattctttgacgcataggcctgc |
32783592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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