View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20464_low_56 (Length: 217)
Name: NF20464_low_56
Description: NF20464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20464_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 53494731 - 53494550
Alignment:
| Q |
18 |
aggctttgtcgagggaaagagtgagaagttgaccgttgtcgagtatcttagcacgaccatctccccatgttatatcaaagttctggtagaagtttcctgc |
117 |
Q |
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| T |
53494731 |
aggctttgtcaagggataaagtgagaagttgtccgttgtcgagtatcttggcacgaccatctccccatgttatatcaaagttctggtaaaagtttccagc |
53494632 |
T |
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| Q |
118 |
tgcatatgtagtcatgaaagtggcaaaaaccaatagagataagaggacagtgatcattgagcaattatgagtgtatgccatg |
199 |
Q |
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| T |
53494631 |
tgcatatgtagtcatgaaagtggcaaaaaccaatagagataagaggacagtgatcattgagcaattatgagtgtatgccatg |
53494550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 53492386 - 53492323
Alignment:
| Q |
35 |
agagtgagaagttgaccgttgtcgagtatcttagcacgaccatctccccatgttatatcaaagt |
98 |
Q |
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| T |
53492386 |
agagtaagaagttggccactgttgagtattttagcacgaccatccccccatgttatatcaaagt |
53492323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 52590442 - 52590385
Alignment:
| Q |
41 |
agaagttgaccgttgtcgagtatcttagcacgaccatctccccatgttatatcaaagt |
98 |
Q |
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| T |
52590442 |
agaagttgtccgttgttgaggattttgccacgaccatcaccccatgttatatcaaagt |
52590385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 37188342 - 37188285
Alignment:
| Q |
41 |
agaagttgaccgttgtcgagtatcttagcacgaccatctccccatgttatatcaaagt |
98 |
Q |
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| T |
37188342 |
agaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagt |
37188285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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