View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_high_11 (Length: 231)
Name: NF20465_high_11
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 3598099 - 3598250
Alignment:
| Q |
64 |
aagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaatgtgaatctcaatttcactactaaaaatagtcacatc |
163 |
Q |
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| T |
3598099 |
aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaacgtgaatctcaatttcactactaaaaatagtcacatc |
3598198 |
T |
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| Q |
164 |
tcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaattt |
215 |
Q |
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| T |
3598199 |
tcgaatcaagttaatgatacttcagaggttgaaatcaacatatgatgaattt |
3598250 |
T |
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Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 4356973 - 4356777
Alignment:
| Q |
17 |
caaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaa |
116 |
Q |
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| T |
4356973 |
caaaggctaatacattattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaagaaagaaatataagaaataacagacaaa |
4356876 |
T |
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| Q |
117 |
gtagtagaaatgtgaatctcaatttcactactaaaaatagtcac--atctcgaatcgagttaatgataattcagaggttgaaatcaacatatgatgaat |
213 |
Q |
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| T |
4356875 |
gtagtagaaacgtgaatctcaatttcgctaacaaaaatagtcacgtatctcaactcaagttcctgatacttcaaaggttgagatcaatatatgatgaat |
4356777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 24455738 - 24455633
Alignment:
| Q |
19 |
aaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagt |
118 |
Q |
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||||||||| ||| ||||||||||| || ||| || |||||| |||||||||||| | |||||| ||| |||||||| | |||||||| || |||| |
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| T |
24455738 |
aaggctaatgcataattcaacaaaaataggatgatactcaatcagaagcatgaaata--gaggaaatgaagcaagaaatagatgaaataactaacgaagt |
24455641 |
T |
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| Q |
119 |
agtagaaa |
126 |
Q |
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|||||||| |
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| T |
24455640 |
agtagaaa |
24455633 |
T |
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