View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20465_high_14 (Length: 212)

Name: NF20465_high_14
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20465_high_14
NF20465_high_14
[»] chr1 (4 HSPs)
chr1 (18-198)||(34624263-34624443)
chr1 (43-191)||(20039433-20039582)
chr1 (69-198)||(29403685-29403815)
chr1 (38-161)||(29403775-29403901)
[»] chr8 (3 HSPs)
chr8 (23-198)||(13955806-13955980)
chr8 (56-197)||(20293255-20293398)
chr8 (56-197)||(21079886-21080029)
[»] chr7 (4 HSPs)
chr7 (22-191)||(15660191-15660360)
chr7 (22-198)||(18846238-18846414)
chr7 (111-198)||(47790321-47790409)
chr7 (26-96)||(47790372-47790442)
[»] chr6 (2 HSPs)
chr6 (47-190)||(19058908-19059052)
chr6 (120-191)||(29355388-29355460)
[»] chr4 (2 HSPs)
chr4 (111-198)||(9498934-9499022)
chr4 (47-109)||(9498922-9498984)
[»] chr3 (1 HSPs)
chr3 (43-150)||(28914437-28914544)
[»] chr2 (1 HSPs)
chr2 (120-198)||(23219045-23219124)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 34624443 - 34624263
Alignment:
Q  18 gtaagaatacaaacagttaaaataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34624443 gtaagaatacaaacagttaaaataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattt 34624344  T
Q  118 tagttataaaagagagggaagcctagagggtgaggcattaagaaagtttgtaagagttgtttaggagaaaagttgtctctg 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34624343 tagttataaaagagagggaagcctagagggtgaggcattaagaaagtttgtaagagttgtttaggagaaaagttgtctctg 34624263  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 20039433 - 20039582
Alignment:
Q  43 ttattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagttataaaagagagggaagccta 142  Q
    |||||||||||| || ||| || |||||||  ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||    
T  20039433 ttattggaatctaggaagagtttcagttattcaagagaaggaagcctagagggttagtcattaagaacagagtttcagttataaaagagagagaagccta 20039532  T
Q  143 gagggtgaggcattaagaaagttt-gtaagagttgtttaggagaaaagtt 191  Q
    |||||||| ||||  ||||| ||| ||||||||||| ||||||| |||||    
T  20039533 gagggtgatgcatacagaaaatttagtaagagttgtctaggagagaagtt 20039582  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 29403815 - 29403685
Alignment:
Q  69 ttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagttataaaagagagggaagcctagagggtgaggcattaagaaagttt-g 167  Q
    |||| ||| ||| ||||| |||||||||||||||| ||||||||| ||| |||||||||||| ||||||| |||||||||||  |||| |||||||||      
T  29403815 ttataaaaaagagggaagtctagagggttagtcatcaagaagagagtttcagttataaaagatagggaagtctagagggtgattcattcagaaagtttat 29403716  T
Q  168 taagagttgtttaggagaaaagttgtctctg 198  Q
    |||||||||||||||||| ||||| ||||||    
T  29403715 taagagttgtttaggagagaagttctctctg 29403685  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 29403901 - 29403775
Alignment:
Q  38 aataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttag---ttataaaagagagg 134  Q
    |||| |||||||||||| || ||| || ||||||| ||||||| |||||||| ||||||||||||||||||||||| ||| ||   |||||||| |||||    
T  29403901 aatatttattggaatctaggaagagtttcagttattaaagagagggaagccttgagggttagtcattaagaagagagtttcagttattataaaaaagagg 29403802  T
Q  135 gaagcctagagggtgaggcattaagaa 161  Q
    |||| ||||||||| || ||| |||||    
T  29403801 gaagtctagagggttagtcatcaagaa 29403775  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 13955980 - 13955806
Alignment:
Q  23 aatacaaacagttaaaataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagtt 122  Q
    |||||||||||||| ||||||||||||||| | ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  13955980 aatacaaacagttataataattattggaatttaggcagaagtgcagttactaaagagaaggaagcctagagggttagtcattaagaagagattttcagtt 13955881  T
Q  123 ataaaagagagggaagcctagagggtgaggcattaagaaagtttgtaagagttgtttaggagaaaagttgtctctg 198  Q
    ||||||||| ||| || ||||| ||| ||||||| ||||||||  |||||||||||||||||| ||||| ||||||    
T  13955880 ataaaagaggggggagtctaga-ggtaaggcattcagaaagttgctaagagttgtttaggagagaagttctctctg 13955806  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 20293398 - 20293255
Alignment:
Q  56 ggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagttataaaagagagggaagcc-tagagggtgaggca 154  Q
    ||||||||||||||||| |||||||  | |   ||||||||||||| |||||   ||||||| ||||||| | |||||| ||||| ||||||| ||||||    
T  20293398 ggcagaattgcagttattaaagagagcgtaagatagagggttagtctttaagggcagaatttcagttatagaggagaggaaagccctagagggggaggca 20293299  T
Q  155 ttaagaaagtttg-taagagttgtttaggagaaaagttgtctct 197  Q
    || |||||||||| |||||||||||||||||| ||||| |||||    
T  20293298 ttcagaaagtttgctaagagttgtttaggagagaagttctctct 20293255  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 21080029 - 21079886
Alignment:
Q  56 ggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagttataaaagagagggaagcc-tagagggtgaggca 154  Q
    ||||||||||||||||| |||||||  | |   ||||||||||||| |||||   ||||||| ||||||| | |||||| ||||| ||||||| ||||||    
T  21080029 ggcagaattgcagttattaaagagagcgtaagatagagggttagtctttaagggcagaatttcagttatagaggagaggaaagccctagagggggaggca 21079930  T
Q  155 ttaagaaagtttg-taagagttgtttaggagaaaagttgtctct 197  Q
    || |||||||||| |||||||||||||||||| ||||| |||||    
T  21079929 ttcagaaagtttgctaagagttgtttaggagagaagttctctct 21079886  T

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Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 15660191 - 15660360
Alignment:
Q  22 gaatacaaacagttaaaataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagt 121  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||  ||    
T  15660191 gaatacaaacagttataataattattggaatttaggcagaattgcagttattgaagagagggaagcctagagggtcagtcattaagaagagaatttccgt 15660290  T
Q  122 tataaaagagagggaagcctagagggtgaggcattaagaaagtttg-taagagttgtttaggagaaaagtt 191  Q
    |||||||||| ||| || ||||| | | ||||||| |||||||||| |||||||||||||||||| |||||    
T  15660291 tataaaagaggggggagtctaga-gataaggcattcagaaagtttgttaagagttgtttaggagagaagtt 15660360  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 18846414 - 18846238
Alignment:
Q  22 gaatacaaacagttaaaataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagt 121  Q
    |||||||||| |||| ||||||| ||||||| | |||||||||||||||||  |||||| ||||| ||||||||| |||||||||||||||||||| |||    
T  18846414 gaatacaaacggttataataattgttggaatttaggcagaattgcagttattgaagagagggaagtctagagggtcagtcattaagaagagaatttcagt 18846315  T
Q  122 tataaaagagagggaagcctagagggtgaggcattaagaaag-tttgtaagagttgtttaggagaaaagttgtctctg 198  Q
    |||||||||| ||| || ||||| ||| ||||||| |||||| ||| |||||||||||||||||| ||||| ||||||    
T  18846314 tataaaagaggggggagtctaga-ggtaaggcattcagaaagttttttaagagttgtttaggagagaagttctctctg 18846238  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 198
Target Start/End: Complemental strand, 47790409 - 47790321
Alignment:
Q  111 agaattttagttataaaagagagggaagcctagagggtgaggcattaagaaagttt-gtaagagttgtttaggagaaaagttgtctctg 198  Q
    ||||||| |||||| ||| |||||||| |||||||||||| ||| | |||||||||  |||||||||||||||||| ||||| ||||||    
T  47790409 agaatttcagttattaaacagagggaatcctagagggtgaagcagtcagaaagtttcttaagagttgtttaggagagaagttctctctg 47790321  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 47790442 - 47790372
Alignment:
Q  26 acaaacagttaaaataattattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggt 96  Q
    ||||||| ||| ||||||||||||||||  || |||||| ||||||| ||| ||| |||| ||||||||||    
T  47790442 acaaacatttagaataattattggaatcaaggaagaatttcagttattaaacagagggaatcctagagggt 47790372  T

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Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 19059052 - 19058908
Alignment:
Q  47 tggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagttataaaagagagggaagcctagagg 146  Q
    |||||||| || |||||| ||||||| |||||||||||| ||||||||| ||||||||||||||| ||||| ||||| |||||||| |||||||||||||    
T  19059052 tggaatctaggaagaatttcagttattaaagagaaggaatcctagagggctagtcattaagaagacaatttcagttaaaaaagagacggaagcctagagg 19058953  T
Q  147 gtgaggcattaagaaagtttg-taagagttgtttaggagaaaagt 190  Q
    ||||  | ||||| ||||||| |||||||||||||||||| ||||    
T  19058952 gtgaatcgttaaggaagtttgttaagagttgtttaggagataagt 19058908  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 29355460 - 29355388
Alignment:
Q  120 gttataaaagagagggaagcctagagggtgaggcattaagaaagtttg-taagagttgtttaggagaaaagtt 191  Q
    ||||||||||||||| |||||||||| || ||||||| | |||||||| |||||||||||||||||| |||||    
T  29355460 gttataaaagagaggaaagcctagagagtaaggcattcataaagtttgttaagagttgtttaggagagaagtt 29355388  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 111 - 198
Target Start/End: Original strand, 9498934 - 9499022
Alignment:
Q  111 agaattttagttataaaagagagggaagcctagagggtgaggcattaagaaagtttg-taagagttgtttaggagaaaagttgtctctg 198  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  9498934 agaatttcagttatataagagagggaagcctagagggtgagacattaagaaagtttgttaagagttgtttaggagagaagttctctctg 9499022  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 9498922 - 9498984
Alignment:
Q  47 tggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaa 109  Q
    |||||||| || |||||| |||||||  |||||| ||||||||||||||| || |||||||||    
T  9498922 tggaatctaggaagaatttcagttatataagagagggaagcctagagggtgagacattaagaa 9498984  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 28914544 - 28914437
Alignment:
Q  43 ttattggaatcttggcagaattgcagttatcaaagagaaggaagcctagagggttagtcattaagaagagaattttagttataaaagagagggaagccta 142  Q
    |||||||||||| |  ||| || ||||||| |||| || ||||| ||||| |||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  28914544 ttattggaatctagtaagagtttcagttattaaagtgagggaagactagatggttagtcattaagaagagagtttcagttatataagagagggaagccta 28914445  T
Q  143 gagggtga 150  Q
    ||||||||    
T  28914444 gagggtga 28914437  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 23219124 - 23219045
Alignment:
Q  120 gttataaaagagagggaagcctagagggtgaggcattaagaaagtttgt-aagagttgtttaggagaaaagttgtctctg 198  Q
    ||||||| ||||||| || |||||||  ||||||||| ||||||||||| | ||||||||||||||| ||||| ||||||    
T  23219124 gttataagagagaggaaaacctagagaatgaggcattcagaaagtttgtcatgagttgtttaggagagaagttctctctg 23219045  T

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