View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_high_3 (Length: 388)
Name: NF20465_high_3
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 157 - 381
Target Start/End: Complemental strand, 7003368 - 7003145
Alignment:
| Q |
157 |
acaaatgaaatgttatagattgttatctcacaaaacaaatgtgattagctatgttgcacaatcaaaagttttaaggtacaaatacgtctatatcgaattt |
256 |
Q |
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| T |
7003368 |
acaaatgaaatgttatagattgttatgtcacaaaacaaatgtgattagctatgttgcgcaatcaaaagttttaaggtacaaatacgtctatatcgaattt |
7003269 |
T |
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| Q |
257 |
taatagaatttaatatcataaaatttcaaatttatctaaaatacaaaaacacatatcagaaataacacaaaaggagtcaaatttattaagtttggtgatt |
356 |
Q |
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| T |
7003268 |
taatagaatttaatatcataaaatttcaaatttatctaaaatacaaaaacacatatcagaaataacacaaaaggagtcaaatttattaagctt-gtgatt |
7003170 |
T |
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| Q |
357 |
gctacaagattgagttaagcctatg |
381 |
Q |
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| T |
7003169 |
gctacaagattgagttaagcctatg |
7003145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 7003509 - 7003400
Alignment:
| Q |
16 |
actcccatcgtactccttgatttcaaatgcaactggacctataaacatccaattgaacatttgcttcacaacatgttaaaatttcaatagtgatcttgac |
115 |
Q |
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| T |
7003509 |
actcccatcgtactccttgatttcaaatgcaactggacctataaacatccaattgaacatttgcttcacaacatgttaaaatttcaatagtgatcttgac |
7003410 |
T |
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| Q |
116 |
acaatatttt |
125 |
Q |
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| T |
7003409 |
acaatatttt |
7003400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 333
Target Start/End: Complemental strand, 7012521 - 7012376
Alignment:
| Q |
195 |
atgtgattagctatgttgcacaatcaaaa-gttttaaggtacaaatacgtctatatcgaattttaatagaattt--aat-atcataaaatt-tcaaattt |
289 |
Q |
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| T |
7012521 |
atgtgattagctatgctgcataatcaaaaagttttaaggtacaagtacgtctatatagaatcttagttgaatttgaaataataataaaattgaaaaattt |
7012422 |
T |
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| Q |
290 |
atctaaaatacaaaaacac--atatcagaaataacacaaaaggagt |
333 |
Q |
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| T |
7012421 |
acctaaaatataaaaacacaaatatcagaaatgacacaaaaggagt |
7012376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 6993323 - 6993269
Alignment:
| Q |
17 |
ctcccatcgtactccttgatttcaaatgcaactggacctataaacatccaattga |
71 |
Q |
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| T |
6993323 |
ctcccatcgtactccttgatttcaaatgcaactggacctattaacattcaattga |
6993269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 7012882 - 7012831
Alignment:
| Q |
17 |
ctcccatcgtactccttgatttcaaatgcaactggacctataaacatccaat |
68 |
Q |
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| T |
7012882 |
ctcccatcgtactccttgttttcaaatgcaactggacctattaacatccaat |
7012831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 7019359 - 7019303
Alignment:
| Q |
15 |
cactcccatcgtactccttgatttcaaatgcaactggacctataaacatccaattga |
71 |
Q |
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| T |
7019359 |
cactcccgttgtactccttgatttcaaatgcaaatggacctaacaacattcaattga |
7019303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 7045916 - 7045870
Alignment:
| Q |
25 |
gtactccttgatttcaaatgcaactggacctataaacatccaattga |
71 |
Q |
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| T |
7045916 |
gtactccttgatttcgaatgcaaatggacctattaacattcaattga |
7045870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 7051838 - 7051792
Alignment:
| Q |
17 |
ctcccatcgtactccttgatttcaaatgcaactggacctataaacat |
63 |
Q |
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||||| || |||||||||||||||||||||| ||||||||| ||||| |
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| T |
7051838 |
ctcccgtcatactccttgatttcaaatgcaaatggacctattaacat |
7051792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 7026155 - 7026123
Alignment:
| Q |
25 |
gtactccttgatttcaaatgcaactggacctat |
57 |
Q |
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| T |
7026155 |
gtactccttgatttcaaatgcaaatggacctat |
7026123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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