View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_high_5 (Length: 346)
Name: NF20465_high_5
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 326
Target Start/End: Complemental strand, 27756854 - 27756552
Alignment:
| Q |
11 |
cataggggtcagattattatagtcttggaaa-ctacatcatttaacatgtgtgattatacacagagttgatggaaatttcaaaaacacatgtgcgattat |
109 |
Q |
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| T |
27756854 |
cataggggtcagattattatagtcttggaaaactacatcatttaacatgtgggattaaacatagagttgatagaaatttcaaaaacacatgtgcgattat |
27756755 |
T |
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| Q |
110 |
a-ttgttaaagtttaatacgatgcagtattagtagatgcatgtcaaaacgtttgttgacacaaatttctaagaatctcaatgagtataatcccacctgat |
208 |
Q |
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| T |
27756754 |
acttgttaaagtttaata---------------agatgcatgtcgaaatgtttgttgacacaaatttctaagaatctcaatgagtataatcctacctgat |
27756670 |
T |
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| Q |
209 |
aatccacaccagttgttgtaacaagtcgaaaaaatcctaagaagataagtggactagatgaaactattgcagtcttccaatttctgaaacaagtaagaaa |
308 |
Q |
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| T |
27756669 |
aatccacaccagttgttgtaacaagtcgaaaaaatcctaagaagataagtggactagatgaaactattgcagtcttccaatttctgaagcaagcaagaaa |
27756570 |
T |
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| Q |
309 |
tgatgttatcagaggaaa |
326 |
Q |
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| T |
27756569 |
tgatgttataagaggaaa |
27756552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 24167599 - 24167465
Alignment:
| Q |
153 |
aaaacgtttgttgacacaaatttctaagaatctcaatgagtataatcccacctgataatccacaccagttgttgtaacaagt-cgaaaaaatcctaagaa |
251 |
Q |
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| T |
24167599 |
aaaatgtttgttgactcaa-tttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacaagtaaaaaaaaatcctaagaa |
24167501 |
T |
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| Q |
252 |
gataagtggactagatgaaactattgcagtcttcca |
287 |
Q |
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| T |
24167500 |
gataagtagtctacaagaagctactgcaatcttcca |
24167465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 46225739 - 46225874
Alignment:
| Q |
153 |
aaaacgtttgttgacacaaatttctaagaatctcaatgagtataatcccacctgataatccacaccagttgttgtaacaagtcgaaaaaatcctaagaag |
252 |
Q |
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|||| |||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| || | ||||||| |||||| |
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| T |
46225739 |
aaaatgtttgttgactcaa-tttctaagaatatcaatgaatataatcccacctgataatccacaccaattgttgtaacaggttaagaaaatcccaagaag |
46225837 |
T |
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| Q |
253 |
ataagtg--gactagatgaaactattgcagtcttcca |
287 |
Q |
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| T |
46225838 |
ataagtggagactacatggaactactgcaatcttcca |
46225874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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