View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_high_6 (Length: 300)
Name: NF20465_high_6
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 28095175 - 28094909
Alignment:
| Q |
15 |
cacagacaaacacatctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtca |
114 |
Q |
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| T |
28095175 |
cacagacaaacacatctcagaataagaaacgtcaagaaaagttagttgcattcatgttgtcaccaacaccatcgttcactccatccatatgttttcgtca |
28095076 |
T |
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| Q |
115 |
ttttatcctttgttcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacnnnnnnngtaataagagaatggaagataaaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
28095075 |
ttttatcctttgttcttctgctttgtcctacaaccttgcttacaacaaagtgaaaatcatatcagggacaaaaaaagtaataagagaatggaagat--aa |
28094978 |
T |
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| Q |
215 |
aagtaattagagtcatatttataccaagaattacatgatgcaaagccattactctaccaattacttaat |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28094977 |
aagtaattagagtcatatttataccaagaattacatgatgcaaagccattattctaccaattacttaat |
28094909 |
T |
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