View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_low_11 (Length: 291)
Name: NF20465_low_11
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 63 - 280
Target Start/End: Original strand, 684112 - 684329
Alignment:
| Q |
63 |
ttatattatttcctttcctgatcacattctcttttacttttgaattacattttctcatttatttctttaataactatgatctcctaccataatgtataaa |
162 |
Q |
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| T |
684112 |
ttatattatttcctttcctgatcacattctcttttacttttgaattacattttctcatttatttctttaataactatgatctcctaccataatgtataaa |
684211 |
T |
|
| Q |
163 |
tacaaacatgaattgcaatttactctttttaatataaaagaaccttttaagggtgatgaaattgtgaacattctggtaatcatgttattggtgcgaatta |
262 |
Q |
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| T |
684212 |
tacaaacatgaattgcaatttactctttttaatataaaagaaccttttaagggtgatgaaattgtgaacattctggtaatcatgttattggtgcaaatta |
684311 |
T |
|
| Q |
263 |
tccatcgggtctctgctc |
280 |
Q |
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|||||||||||||||||| |
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| T |
684312 |
tccatcgggtctctgctc |
684329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 646662 - 646788
Alignment:
| Q |
58 |
ataagttatattatttcctttcctgatcacattctcttttacttttgaattacattttctcatttatttctttaataactatgatctcctaccataatgt |
157 |
Q |
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|||||||||| | ||||||||| || |||||| |||| || | || ||| | || |||||||||||||| ||||||||| ||| |||||| || | ||| |
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| T |
646662 |
ataagttatactctttcctttcttggtcacatactctctttccttcgaaattcactttctcatttatttttttaataaccatggtctcctcccttcgtgt |
646761 |
T |
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| Q |
158 |
ataaatacaaacatgaattgcaattta |
184 |
Q |
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||||||||||||||||||||||||||| |
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| T |
646762 |
ataaatacaaacatgaattgcaattta |
646788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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