View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_low_12 (Length: 285)
Name: NF20465_low_12
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 77 - 280
Target Start/End: Complemental strand, 47879820 - 47879617
Alignment:
| Q |
77 |
atttgatatttctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaa |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47879820 |
atttgatatttctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaa |
47879721 |
T |
|
| Q |
177 |
ttctctcagccttgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgcctttgc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47879720 |
ttctctcagccttgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgcttttgc |
47879621 |
T |
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| Q |
277 |
ttct |
280 |
Q |
| |
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|||| |
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| T |
47879620 |
ttct |
47879617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 47879571 - 47879390
Alignment:
| Q |
89 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
188 |
Q |
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||||||| ||| |||| ||||| |||||||||||| ||||||||||||| | ||||||| |||| || || ||||||||||||||| ||||| |
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| T |
47879571 |
tttggcacgaagatgttgaatcctaaaattaaatttttatgccctttaaacaaatccttcaatcttgctatgacaccatttgtatcaattctcatagcct |
47879472 |
T |
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| Q |
189 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgcatggacatatgc |
270 |
Q |
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| T |
47879471 |
tgaaatccttcataacatttaaaaattcatcatacttttctatctcatcttgaaactcgtcttttacagcctcgacatatgc |
47879390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 47879890 - 47879853
Alignment:
| Q |
7 |
tctgatctacttccatgtcttctgcttcttcgtcagtc |
44 |
Q |
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| T |
47879890 |
tctgatctacttccatgtcttctgcttcttcgtcagtc |
47879853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 47881470 - 47881639
Alignment:
| Q |
89 |
tttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagcct |
188 |
Q |
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||||||| ||| |||| ||||| || |||||||||||||||||||||| || |||||||||||| |||||| |||||||||||| ||||| |
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| T |
47881470 |
tttggcaagaaggtgttgaatcccaagattaaatttgtatgccctttaagcagcaccttcactctttctacgagaccaccagtatcaattctcctagcct |
47881569 |
T |
|
| Q |
189 |
tgcaatccttaacagctttcacaaattcaacatacttttccctctcatattgaaactcaacttttactgc |
258 |
Q |
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| T |
47881570 |
tgaattctttcataacatttaaaaattcatcatacttttccatctcatcttgaaactcaactcttactgc |
47881639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 532620 - 532720
Alignment:
| Q |
98 |
aagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagccttgcaatcct |
197 |
Q |
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|||||||| ||||| |||||||||| ||||||||||||||| | ||||| ||||||| ||||| || ||||||||||||| ||||||| |||||| |
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| T |
532620 |
aagttgttgaatcccaaaattaaatctgtatgccctttaaacaaatccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatcct |
532719 |
T |
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| Q |
198 |
t |
198 |
Q |
| |
|
| |
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|
| T |
532720 |
t |
532720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 565207 - 565303
Alignment:
| Q |
102 |
tgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttttcgcgagacattttgtatcaattctctcagccttgcaatcctt |
198 |
Q |
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|||| ||||| |||||||||| ||||||||||||||| | |||| ||||||| ||||| || ||||||||||||| ||||||| ||||||| |
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| T |
565207 |
tgttgaatcccaaaattaaatctgtatgccctttaaacaaacccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatcctt |
565303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 26214656 - 26214723
Alignment:
| Q |
88 |
ctttggcagaaagttgttaaatccaaaaattaaatttgtatgccctttaaatagttccttcactcttt |
155 |
Q |
| |
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|||||||| |||| |||||||||| ||||| |||| | ||||||||||||| || ||||||||||||| |
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| T |
26214656 |
ctttggcaaaaaggtgttaaatcccaaaatcaaatctttatgccctttaaacagctccttcactcttt |
26214723 |
T |
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