View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_low_3 (Length: 659)
Name: NF20465_low_3
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 36 - 643
Target Start/End: Original strand, 37796700 - 37797307
Alignment:
| Q |
36 |
gaagaggtaaagatgagtgagaggttaataatttgagagataaagacataaagtggaaacaaagagtgtaggagggagagtagaaaatgattaaggtcct |
135 |
Q |
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| T |
37796700 |
gaagaggtaaagatgagtgagaggttaacaatttgagagataaagacataaagtggaaacaaagagtgtaggagggagagtagaaaatgattaaggtcct |
37796799 |
T |
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| Q |
136 |
tagacaagaaaccctttgttgtgaaaacaaaaagtcgattgcttattgtaccagaagtctgtatggcaaggccaaaaagagggaagtgaatttagtgccg |
235 |
Q |
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| T |
37796800 |
tagacaagaaaccctttgttgtgaaaacaaaaagtcgattgcttattgtaccagaagtctgtatggcaaggccaaaaagagggaagtggatttagtgccg |
37796899 |
T |
|
| Q |
236 |
taaaaaacaacacaatttttattttaattattcgatgagtttgacaaagttacaataataccgtctaataaagagatatttatatttccactgatgcact |
335 |
Q |
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| T |
37796900 |
taaaaaacaacacaatttttattttaattattcgatgagtttgacaaagttacaataataccgtctaataaagagatatttatatttccactgatgcact |
37796999 |
T |
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| Q |
336 |
tatttagaagaatcttgatcttcattttcctcacccggggcatttcttttatcatttacttcttcctcgtatggcgtttcactatagggtgttgtcacct |
435 |
Q |
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| T |
37797000 |
tatttagaagaatcttgatcttcattttcctcacccggggcatttcttttatcatttacttcttcctcgtatggtgtttcactatagggtgttgtcacct |
37797099 |
T |
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| Q |
436 |
ggtttatccattatctgcaaattcttgcactagctttgccttttcattgccaagctctttgtcaataaaccttacatgaattgattcttccaccattaag |
535 |
Q |
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| T |
37797100 |
ggtttatccattatctgcaaattcttgcactagtttttccttttcattgccaagctctttgtcaataaaccttacatgaattgattcttccaccattaag |
37797199 |
T |
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| Q |
536 |
gtttcttcgttatatactctttatactctaggtcgttcaaaatatcctcaaaacacatacatttgtggtttgaaaataagaattcattacaaccaaattg |
635 |
Q |
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| T |
37797200 |
gtttcttcgttatatactctttatactctaggtcgttcaaaatattctaaaaacacatacatttgtggtttgaaaataagaattcattacaaccaaattg |
37797299 |
T |
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| Q |
636 |
atgaaaat |
643 |
Q |
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| T |
37797300 |
atgaaaat |
37797307 |
T |
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