View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20465_low_8 (Length: 313)
Name: NF20465_low_8
Description: NF20465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20465_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 35357976 - 35357669
Alignment:
| Q |
1 |
tttattaccaaccctaaagctgttggtatgtgcaccaagttagtttttaaccaattatttaaatttaggtcttaattatatttgaacttatcaataaaat |
100 |
Q |
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| T |
35357976 |
tttattaccaaccctaaagcttttggtatgtgcaccaagttagtttttaaccaattatttaaatttaggtcttaattatatttgaacttatcaataaaat |
35357877 |
T |
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| Q |
101 |
ttggac--caacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgccca |
198 |
Q |
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| T |
35357876 |
ttggacaccaacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgccca |
35357777 |
T |
|
| Q |
199 |
aatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaacagatgttaattggatccaacctgtatatga |
298 |
Q |
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| T |
35357776 |
aatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaacagatgttcattggatccaacctgtatatga |
35357677 |
T |
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| Q |
299 |
accctatg |
306 |
Q |
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| T |
35357676 |
accctatg |
35357669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 306
Target Start/End: Complemental strand, 35376423 - 35376224
Alignment:
| Q |
107 |
caacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgcccaaatcgaaa |
206 |
Q |
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| T |
35376423 |
caacaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgaga |
35376324 |
T |
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| Q |
207 |
cctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaacagatgttaattggatccaacctgtatatgaaccctatg |
306 |
Q |
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| T |
35376323 |
cctttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagtgcaacagatcttgactggctccaatgagtatatgtaccctatg |
35376224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 108 - 306
Target Start/End: Complemental strand, 35364658 - 35364460
Alignment:
| Q |
108 |
aacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgcccaaatcgaaac |
207 |
Q |
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| T |
35364658 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
35364559 |
T |
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| Q |
208 |
ctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaacagatgttaattggatccaacctgtatatgaaccctatg |
306 |
Q |
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| T |
35364558 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatcttgaatggctccaatgagtatatgtaccctatg |
35364460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Complemental strand, 35353635 - 35353607
Alignment:
| Q |
216 |
attttgggatgcatttcatccatctgaaa |
244 |
Q |
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| T |
35353635 |
attttgggatgcatttcatccatctgaaa |
35353607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 48085212 - 48085292
Alignment:
| Q |
184 |
tcaaaattgtgcccaaatcgaaacctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtc |
264 |
Q |
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| T |
48085212 |
tcaaacttgtgcccaaacagagaacttaatgctttttgggatgcattccatccatctgaaaaggcaaacaaaatcatagtc |
48085292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 48102490 - 48102524
Alignment:
| Q |
211 |
tatgcattttgggatgcatttcatccatctgaaaa |
245 |
Q |
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| T |
48102490 |
tatgcattttgggatgcattccatccatctgaaaa |
48102524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 7385610 - 7385577
Alignment:
| Q |
212 |
atgcattttgggatgcatttcatccatctgaaaa |
245 |
Q |
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| T |
7385610 |
atgcattttgggatgcattccatccatctgaaaa |
7385577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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