View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20466_high_4 (Length: 306)
Name: NF20466_high_4
Description: NF20466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20466_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 21781779 - 21781509
Alignment:
| Q |
13 |
aatattgtagaaacgaaggaatcaacaaacaatgtcaacaaaccttttaaaagttatcttgttcatcgcaattttgtcaatcttattgacaaggactgaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21781779 |
aatattgtagaaacgaaggaatcaacaaacaatgtcaacaa-ccttttaaaagttatcttgttcatcgcaattttgtcaatcttattgacaaggactgaa |
21781681 |
T |
|
| Q |
113 |
atttcaaactcttcttttcagataagacaatgatttcattgaacacaagggaactttacatatgtactaataagtcaggttcaaccgtttatagatccat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21781680 |
atttcaaactcttcttttcagataagacaatgatttcattgaacacaagggaactttacatatgtactaataagtcaggttcaaccgtttatagatccat |
21781581 |
T |
|
| Q |
213 |
tttgcggaagaaaccaaacataggacaagttgaagacaatgacagataataaaacaaacagaataatgtata |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21781580 |
tttgcggaagaaaccaaacataggacaagttgaagacaatgacagataataaaacaaacagaataatgtata |
21781509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 203
Target Start/End: Complemental strand, 23040895 - 23040813
Alignment:
| Q |
122 |
tcttcttttcagataagacaatgatttcattgaacacaagggaa-ctttacatatgtactaataagtcaggttcaaccgttta |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
23040895 |
tcttcttttgagataagacaatgatttcattgggcacaacggaacctttgcatctgtactaataagtcaggtacaaccgttta |
23040813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University