View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20466_high_5 (Length: 302)
Name: NF20466_high_5
Description: NF20466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20466_high_5 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (2 HSPs) |
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| [»] scaffold0597 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0941 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 1758 - 1485
Alignment:
| Q |
11 |
cagagattagggattaaagagtttctatcattaacacaaaacactttaagacctagattaagaagccatctaggtgacaaatcagacacaagcatccaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1758 |
cagagattagggattaaagagtttctatcattaacacaaaacactttaagacctagattaagaagccatctaggtgacaaatcagacacaagcatccaag |
1659 |
T |
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| Q |
111 |
gttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaagagctaattttgtaggagaattagctaaacctcttaagttccaataaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1658 |
gttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaagagctaattttgtaggagaattagctaaacctcttaagttccaataaag |
1559 |
T |
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| Q |
211 |
gcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataaggctttgattttgaactcttcag |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1558 |
gcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataaggctttgattttgaactcttcag |
1485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 76 - 283
Target Start/End: Original strand, 36425 - 36632
Alignment:
| Q |
76 |
ccatctaggtgacaaatcagacacaagcatccaaggttcagaaatgaaacaaacatcaggtttatatttagataatagttttttaagagctaattttgta |
175 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
36425 |
ccatctaggtgacaaatcagacacaagcatccagggttcataaatgaaacaaacatcaggtttatatgtaaataatagttttttaagagctaattttgta |
36524 |
T |
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| Q |
176 |
ggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataaggctttgattttga |
275 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36525 |
ggagaattagctaaacctcttaagttccaataaatgcacttcatataaaatgcttgggagcacgaacctttgatcttgtgatataaggctttgattttga |
36624 |
T |
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| Q |
276 |
actcttca |
283 |
Q |
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|||||||| |
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| T |
36625 |
actcttca |
36632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 33463 - 33533
Alignment:
| Q |
11 |
cagagattagggattaaagagtttctatcattaacacaaaacactttaagacctagattaagaagccatct |
81 |
Q |
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| T |
33463 |
cagagattagggattaaagagtttctatcattaacacaaaacactttgagacctagattataaagccatct |
33533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 44 - 266
Target Start/End: Original strand, 15090749 - 15090971
Alignment:
| Q |
44 |
acacaaaacactttaagacctagattaagaagccatctaggtgacaaatcagacacaagcatccaaggttcagaaatgaaacaaacatcaggtttatatt |
143 |
Q |
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|||||||||||| | ||||||||||| |||||||||||| || | || |||||| |||||||| |||||||| || || |||| ||| ||||| |||| |
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| T |
15090749 |
acacaaaacactctgagacctagattttgaagccatctagaagatagattagacaccagcatccagggttcagatataaagcaaatatctggtttgtatt |
15090848 |
T |
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| Q |
144 |
tagataatagttttttaagagctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacc |
243 |
Q |
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||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
15090849 |
tagataataattttttaagagctaatttcgtaggtgaattagctaaacctcttaaattccagtaaaagcacttcatctgaaaggtttgggggcaccaacc |
15090948 |
T |
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| Q |
244 |
tttgatcttgtgatataaggctt |
266 |
Q |
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||||||||||||||||||||||| |
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| T |
15090949 |
tttgatcttgtgatataaggctt |
15090971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 20970007 - 20970125
Alignment:
| Q |
163 |
agctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatcttgtgatataag |
262 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||| | ||| ||||| ||||||||||||| | |||| ||||| |
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| T |
20970007 |
agctaattttttaggagaattagctaaacctcttaggttccaataaaaacacttcatctgacaggtttgggtttaccaacctttgatatggtgagataag |
20970106 |
T |
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| Q |
263 |
gctttgattttgaactctt |
281 |
Q |
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| | ||||||||||||||| |
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| T |
20970107 |
gttatgattttgaactctt |
20970125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 30411427 - 30411343
Alignment:
| Q |
163 |
agctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgatct |
251 |
Q |
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| T |
30411427 |
agctaattttgtgggagtattagctaaacctctgaagttccaata---gcac-tcatctaaaaggtttgggaggaccaacctttgatct |
30411343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 3821 - 3736
Alignment:
| Q |
164 |
gctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcatctaaaaggcttgggagcaccaacctttgat |
249 |
Q |
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||||||||||| ||||||||||| || ||||| | |||||||| ||||||||||| | ||||| ||| ||||||||||||||| |
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| T |
3821 |
gctaattttgtgggagaattagccaaccctctaagattccaatataggcacttcatttgaaaggtctggatgcaccaacctttgat |
3736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 22166097 - 22166158
Alignment:
| Q |
158 |
ttaagagctaattttgtaggagaattagctaaacctcttaagttccaataaaggcacttcat |
219 |
Q |
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||||||||||||||| | ||||||||||||||||| || | |||||| |||| ||||||||| |
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| T |
22166097 |
ttaagagctaattttatgggagaattagctaaacccctaaggttccagtaaaagcacttcat |
22166158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 140508 - 140556
Alignment:
| Q |
185 |
gctaaacctcttaagttccaataaaggcacttcatctaaaaggcttggg |
233 |
Q |
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||||| ||||||| ||||||||||||| |||||||||||||| ||||| |
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| T |
140508 |
gctaagcctcttaggttccaataaaggatcttcatctaaaaggtttggg |
140556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 49683 - 49731
Alignment:
| Q |
179 |
gaattagctaaacctcttaagttccaataaaggcacttcatctaaaagg |
227 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
49683 |
gaattagctaaaccccttatgttccaataaagtaccttcatctaaaagg |
49731 |
T |
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