View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20466_low_10 (Length: 227)
Name: NF20466_low_10
Description: NF20466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20466_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 39311908 - 39311677
Alignment:
| Q |
5 |
caactgtgagcttcaagtaaggccaaattcctatgaaggctttcacagtgaaaccaatccaagtttccttgcatgttgggctaaaaaggatgtccaatcc |
104 |
Q |
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| T |
39311908 |
caactgtgagcttcaagtaaggccaaattcctatgaaggctttcacagtgaaaccaatccaagtttccttgcatgttgggctaaaaaggatgtacaatcc |
39311809 |
T |
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| Q |
105 |
actaaaaaagaccagaa-----------aagctgagagtgagggctgccccgagaaggctatagcctaaaacatagacgactagccagctaaaaagcata |
193 |
Q |
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| T |
39311808 |
attaaaaaagacaagaatccaccaagaaaagctgagagtgagggctgccccgagaaggctatagcctaaaacatagacgactagccagctaaaaagcata |
39311709 |
T |
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| Q |
194 |
tgaagaaggaatactccaactgccatatatgt |
225 |
Q |
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| T |
39311708 |
tgaagaaggaatactccaactgccatatatgt |
39311677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 39316385 - 39316155
Alignment:
| Q |
5 |
caactgtgagcttcaagtaaggccaaattcctatgaaggctttcacagtgaaaccaatccaagtttccttgcatgttgggctaaaaaggatgtccaatcc |
104 |
Q |
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| T |
39316385 |
caactgtaagcttaaagtaaggccaaattcctatgaaggccttcatagtgaagccagtccaagtttccttgcattttggactaaaaatgatgtacaatgc |
39316286 |
T |
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| Q |
105 |
actaaaaaaga-----------ccagaaaagctgagagtgagggctgccccgagaaggctatagcctaaaacatagacgactagccagctaaaaagcata |
193 |
Q |
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| T |
39316285 |
atttaaaaagacaagaatccaccaagaaaagctgagagtaagggctgcacctagaaggccatagcctaaaacaacaacgactagccagctaagaagcgca |
39316186 |
T |
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| Q |
194 |
tgaagaaggaatactccaactgccatatatg |
224 |
Q |
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| T |
39316185 |
tgaagaaggagaactccaactgccatatatg |
39316155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 38136767 - 38136979
Alignment:
| Q |
19 |
aagtaaggccaaattcctatgaaggctttcacagtgaaaccaatccaagtttccttgcatgttgggctaaaaaggatgtccaatccactaaaaaaga--- |
115 |
Q |
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| T |
38136767 |
aagtaaggccaaattcctacgaaggccttaatagtgaagccggtccaagtttccttgcattttggactaagaacgatgtacaatacatttaaaaagacaa |
38136866 |
T |
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| Q |
116 |
--------ccagaaaagctgagagtgagggctgccccgagaaggctatagcctaaaacatagacgactagccagctaaaaagcatatgaagaaggaatac |
207 |
Q |
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| T |
38136867 |
gaatccaccaagaaaagctgagagtaagggctgcgcctagaaggccatagcctaaaatatcaacaactagccagttaagacgcacatgaagaaagagaac |
38136966 |
T |
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| Q |
208 |
tccaactgccata |
220 |
Q |
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| T |
38136967 |
tccaactcccata |
38136979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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