View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20466_low_2 (Length: 591)
Name: NF20466_low_2
Description: NF20466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20466_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 41921206 - 41920638
Alignment:
| Q |
18 |
actatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtttctgcaacatctatgcgaccacaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921206 |
actatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtttctgcaacatctatgcgaccacaa |
41921107 |
T |
|
| Q |
118 |
tttactattggtcgcatcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctaccaaataa |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41921106 |
tttactattggtcgcatcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctatcaaataa |
41921007 |
T |
|
| Q |
218 |
ctaagacaatagtactgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttc |
317 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921006 |
ctaagacaatagtactaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttc |
41920907 |
T |
|
| Q |
318 |
tcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920906 |
tcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaa |
41920807 |
T |
|
| Q |
418 |
agacgagtaaatggagtgacctgacatgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaa-ttggct |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41920806 |
agacgagtaaatggagtgacctgacatgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaatttggct |
41920707 |
T |
|
| Q |
517 |
tatgtatttgtacagcatgttacacagtagtagttaaaaaaggtatacatttaaatacatattcttcga |
585 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
41920706 |
tatgtatttgtacagcatgttacacagtagtagttgaaaaaggtatacatttaaatacatattattcga |
41920638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 236 - 440
Target Start/End: Original strand, 26829762 - 26829966
Alignment:
| Q |
236 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
335 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
|
| Q |
336 |
ttcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtg |
435 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||| |||||| |||| |||||||||||| |||||||||| || |
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| T |
26829862 |
ttcactctactagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatg |
26829961 |
T |
|
| Q |
436 |
acctg |
440 |
Q |
| |
|
||||| |
|
|
| T |
26829962 |
acctg |
26829966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 295 - 441
Target Start/End: Original strand, 26782932 - 26783078
Alignment:
| Q |
295 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacat |
394 |
Q |
| |
|
|||| ||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||| || | |||||| |
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|
| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgctcgatttaaagacat |
26783031 |
T |
|
| Q |
395 |
gacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
441 |
Q |
| |
|
| ||||||||| ||||||||||| || | |||||| | |||||||| |
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| T |
26783032 |
ggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 235 - 441
Target Start/End: Original strand, 26789245 - 26789451
Alignment:
| Q |
235 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
334 |
Q |
| |
|
|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
335 |
attcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagt |
434 |
Q |
| |
|
|||||||| ||||| ||| || |||||||||| ||||| |||| || ||| |||| ||| ||| ||||| |||| |||||||| | ||||| || | |
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|
| T |
26789345 |
attcactctactagtctctagcagaccaataattgttgcttttgttcgatgtagagctatggtattttcaaagagaacccaaaagataactaaatagaat |
26789444 |
T |
|
| Q |
435 |
gacctga |
441 |
Q |
| |
|
||||||| |
|
|
| T |
26789445 |
gacctga |
26789451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 297 - 420
Target Start/End: Original strand, 26816137 - 26816260
Alignment:
| Q |
297 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatga |
396 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| || ||| |||| ||| |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttgttcgatgtagagctatgg |
26816236 |
T |
|
| Q |
397 |
cattctcaaatagaatccaaaaga |
420 |
Q |
| |
|
||| ||||| |||| |||||||| |
|
|
| T |
26816237 |
tattttcaaagagaacccaaaaga |
26816260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
295 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
341 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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|
| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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