View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20466_low_3 (Length: 381)

Name: NF20466_low_3
Description: NF20466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20466_low_3
NF20466_low_3
[»] chr5 (2 HSPs)
chr5 (18-376)||(20748302-20748660)
chr5 (257-332)||(14485432-14485507)
[»] scaffold0011 (2 HSPs)
scaffold0011 (18-376)||(142399-142757)
scaffold0011 (18-376)||(137175-137533)
[»] chr6 (3 HSPs)
chr6 (18-332)||(16726504-16726818)
chr6 (20-322)||(14653110-14653412)
chr6 (20-322)||(12759790-12760092)
[»] chr8 (3 HSPs)
chr8 (30-332)||(25040381-25040683)
chr8 (122-322)||(6772552-6772752)
chr8 (20-322)||(34211526-34211828)
[»] chr4 (2 HSPs)
chr4 (107-332)||(49944568-49944794)
chr4 (241-332)||(17524800-17524891)
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-322)||(130185-130487)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 20748660 - 20748302
Alignment:
18 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20748660 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 20748561  T
118 caaagttagcaagtctgtgaagctcctatcagaccatccattgtctgcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
20748560 caaagttagcaagtctgtgaagctcctatcagaccatccattgcctgcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacat 20748461  T
218 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
20748460 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactt 20748361  T
318 gatcaaactcataatttgtatctttttcgaaatcagttgatggatctctttcatctctc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
20748360 gatcaaactcataatttgtatctttttcgaaatcagttgatggatctctttcatttctc 20748302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 14485507 - 14485432
Alignment:
257 tcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcgatcaaactcataat 332  Q
    ||||||||||  ||||||||||| ||||| | ||||||| |||||| ||  ||||| |||||||||||||||||||    
14485507 tcaaacatttcgggacaatcacgaagatctttttcaatttcattcataaactcttcgactcgatcaaactcataat 14485432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 142757 - 142399
Alignment:
18 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
142757 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 142658  T
118 caaagttagcaagtctgtgaagctcctatcagaccatccattgtctgcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
142657 caaagttagcaagtctgtgaagctcctatcagaccatccattgcctgcttttaacttatacaattttatgatcgtagacaatcttgtgaatttagtacat 142558  T
218 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
142557 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggaaaatcacggagatcatcttcaattacattcagaatttcttcaactc 142458  T
318 gatcaaactcataatttgtatctttttcgaaatcagttgatggatctctttcatctctc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
142457 gatcaaactcataatttgtatctttttcgaaatcagttgatggatctctttcatttctc 142399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 137533 - 137175
Alignment:
18 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
137533 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 137434  T
118 caaagttagcaagtctgtgaagctcctatcagaccatccattgtctgcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
137433 caaagttagcaagtctgtgaagctcctatcagaccatccattgcctgcttttaacttatacaattttatgatcgtagacaatcttgtgaatttagtacat 137334  T
218 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
137333 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggaaaatcacggagatcatcttcaattacattcagaatttcttcaactt 137234  T
318 gatcaaactcataatttgtatctttttcgaaatcagttgatggatctctttcatctctc 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
137233 gatcaaactcataatttgtatctttttcgaaatcagttgatggatctctttcatttctc 137175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 16726504 - 16726818
Alignment:
18 catgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaa 117  Q
    ||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||    
16726504 catgtatcttctcataactcatgccaatagaacgtaacatctgtttagcctcataggttcgactagggagcacgttattctcagacaacatatcttttaa 16726603  T
118 caaagttagcaagtctgtgaagctcctatcagaccatccattgtctgcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacat 217  Q
    || ||||||||||||||| |||||| |||||||||||||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||    
16726604 catagttagcaagtctgtaaagctcttatcagaccatccattgcgtgcttttaagttatacaattttaagaccgtagacaatcttgtgaatttagcacat 16726703  T
218 ccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactc 317  Q
    || |||||||||||| ||| || |||| || ||| ||||||||||||||  ||||||||||| ||||| ||||  ||| |||||| ||  ||||| ||||    
16726704 ccatcatacaatggtatctttgaatcactttctagcctctcaaacatttcgggacaatcacgaagatcttcttttatttcattcataaactcttcgactc 16726803  T
318 gatcaaactcataat 332  Q
    |||||||||||||||    
16726804 gatcaaactcataat 16726818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 14653110 - 14653412
Alignment:
20 tgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaaca 119  Q
    |||||||| ||||||||||||||||| || || |||| |  ||| || |||||  ||| |||||| || || |||| ||| ||||  |||||| | |  |    
14653110 tgtatcttttcataactcatgccaatcgagcacaacatttttttggcttcataatttctactaggaagaacattatcctttggcagcatatctatcagaa 14653209  T
120 aagttagcaagtctgtgaagctcctatcagaccatccattgtct-gcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacatc 218  Q
      |||| |||||||||||||||  |||||||||||||||| ||| |||||||  || ||||| || || |  | ||||| ||||||||||||  |||| |    
14653210 gggttaacaagtctgtgaagcttttatcagaccatccatt-tctcgcttttatattgtacaacttcaatactgcagacattcttgtgaatttgctacaac 14653308  T
219 cttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcg 318  Q
    | || || |||||| |||||| |||| | || |  ||||||||||||| ||||||||| || ||||| ||||||| |||||  || ||||| ||||||||    
14653309 catcgtataatggtttctctgaatcactaaccaatctctcaaacatttcaggacaatcccgaagatcttcttcaactacatctagcatttcgtcaactcg 14653408  T
319 atca 322  Q
    ||||    
14653409 atca 14653412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 322
Target Start/End: Complemental strand, 12760092 - 12759790
Alignment:
20 tgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaaca 119  Q
    ||||| || ||||||||||||||||| || || |||| |  ||| || |||||| ||| |||||| || || |||| ||| ||||  |||||| | |  |    
12760092 tgtattttttcataactcatgccaatcgagcacaacatttttttggcttcatagtttctactaggaagaacattatcctttggcagcatatctatcagaa 12759993  T
120 aagttagcaagtctgtgaagctcctatcagaccatccattgtct-gcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacatc 218  Q
      |||| |||||||||||||||  |||||||||||||||| ||| |||||||  || ||||| || || |  | ||||| ||||||||||||  | || |    
12759992 gggttaacaagtctgtgaagcttttatcagaccatccatt-tctcgcttttatattgtacaacttcaatactgcagacattcttgtgaatttgctgcaac 12759894  T
219 cttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcg 318  Q
    | ||||| |||||| |||||| |||| | || |  ||||||||||||| ||||||||| || ||||| ||||||| |||||  ||  |||| ||||||||    
12759893 catcatataatggtttctctgaatcactaaccaatctctcaaacatttcaggacaatcccgaagatcttcttcaactacatctagcttttcgtcaactcg 12759794  T
319 atca 322  Q
    ||||    
12759793 atca 12759790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 25040381 - 25040683
Alignment:
30 cataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaacaaagttagcaa 129  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||    
25040381 cataactcatgccaatagaacgtaacatttgtttagcctcataggttcgactagggagcacgttattctcaggcaacatatcttttaatagagttagcaa 25040480  T
130 gtctgtgaagctcctatcagaccatccattgtctgcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacatccttcatacaat 229  Q
    |||||| |||||| |||||||||||||||||  ||||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||    
25040481 gtctgtaaagctcttatcagaccatccattgcgtgcttttaaattatacaattttaagaccgtagacaaccttgtgaatttagcacatccatcatacaat 25040580  T
230 ggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcgatcaaactcat 329  Q
    ||| ||| || |||  |||||| ||||||||||||||  ||||||||||| ||||| ||||||||| |||||| ||  ||||| ||||||||||||||||    
25040581 ggtatctttgaatctcttactagcctctcaaacatttcgggacaatcacgaagatcttcttcaatttcattcataaactcttcgactcgatcaaactcat 25040680  T
330 aat 332  Q
    |||    
25040681 aat 25040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 322
Target Start/End: Complemental strand, 6772752 - 6772552
Alignment:
122 gttagcaagtctgtgaagctcctatcagaccatccattgtct-gcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacatcct 220  Q
    |||| |||||||||||||||  |||||||||||||||| ||| |||||||| || ||||| || || |  | ||||| ||||||||||||  | || ||     
6772752 gttaacaagtctgtgaagcttttatcagaccatccatt-tctcgcttttaaattgtacaacttcaatactgcagacattcttgtgaatttgatgcaacca 6772654  T
221 tcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcgat 320  Q
    ||||| || ||| |||||| |||| | || |  ||||||||||||||||||||||| || ||||| ||||||| |||||  |  ||||| ||||||||||    
6772653 tcatataacggtttctctgaatcactaaccaatctctcaaacattttaggacaatcccgaagatcttcttcaactacatctaccatttcgtcaactcgat 6772554  T
321 ca 322  Q
    ||    
6772553 ca 6772552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 34211526 - 34211828
Alignment:
20 tgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaaca 119  Q
    |||||||| ||||||||||||||||| || || |||| |  ||| || |||||| ||| |||||| || || |||| |||  |||  |||||| | |  |    
34211526 tgtatcttttcataactcatgccaatcgagcacaacatttttttggcttcatagtttctactaggaagaacattatcctttagcagcatatctatcagaa 34211625  T
120 aagttagcaagtctgtgaagctcctatcagaccatccattgtct-gcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacatc 218  Q
      |||| |||||||||||||||  |||||||||||||||| ||| |||||||  || ||||| || || |    ||||| ||||||||||||  | || |    
34211626 gggttaacaagtctgtgaagcttttatcagaccatccatt-tctcgcttttatattgtacaacttcaatactacagacattcttgtgaatttgctgcaac 34211724  T
219 cttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcg 318  Q
    | || || |||||| |||||| |||| | || |  ||||||||||||| ||||||||| || ||||| ||||||| |||||  || ||||| ||||||||    
34211725 catcgtataatggtttctctgaatcactaaccaatctctcaaacatttcaggacaatcccgaagatcttcttcaactacatctagcatttcgtcaactcg 34211824  T
319 atca 322  Q
    ||||    
34211825 atca 34211828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 107 - 332
Target Start/End: Original strand, 49944568 - 49944794
Alignment:
107 atatcttttaacaaagttagcaagtctgtgaagctcctatca-gaccatccattgtctgcttttaacttatacaattttaagatcgtagacaatcttgtg 205  Q
    ||||||||||| | ||||||||||||||| |||||| ||||| ||||||||||||  ||||||||| |||||||||||||||| ||||||||||||||||    
49944568 atatcttttaatagagttagcaagtctgtaaagctcttatcaagaccatccattgcgtgcttttaagttatacaattttaagaccgtagacaatcttgtg 49944667  T
206 aatttagtacatccttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaa 305  Q
    ||||||| |||||| |||||||||||| ||| || |||| |||||| ||||||||||||||  ||||||||||| ||||| ||||||||| |||||| ||    
49944668 aatttagcacatccatcatacaatggtatctttgaatcacttactagcctctcaaacatttcgggacaatcacgaagatcttcttcaatttcattcaaaa 49944767  T
306 tttcttcaactcgatcaaactcataat 332  Q
      ||||| |||||||||||||||||||    
49944768 actcttcgactcgatcaaactcataat 49944794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 17524800 - 17524891
Alignment:
241 atcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcgatcaaactcataat 332  Q
    |||| |||||| ||||||||||||||| | ||| ||||  | ||| |||||||||||||||| ||  ||||| || ||||||||||||||||    
17524800 atcacttactagcctctcaaacattttggcacagtcacatatatcttcttcaattacattcaaaaactcttcgacacgatcaaactcataat 17524891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 130185 - 130487
Alignment:
20 tgtatcttctcataactcatgccaatagaacataacaatcgtttagcctcataggttcgactagggagcacgttattcttaggcaaaatatcttttaaca 119  Q
    |||||||| ||||||||||||||||| || || |||| |  ||| || |||||| ||| |||||| || || |||| |||  |||  |||||| | |  |    
130185 tgtatcttttcataactcatgccaatcgagcacaacatttttttggcttcatagtttctactaggaagaacattatcctttagcagcatatctatcagaa 130284  T
120 aagttagcaagtctgtgaagctcctatcagaccatccattgtct-gcttttaacttatacaattttaagatcgtagacaatcttgtgaatttagtacatc 218  Q
      |||| |||||||||||||||  |||||||||||||||| ||| |||||||  || ||||| || || |  | ||||| ||||||||||||  | || |    
130285 gggttaacaagtctgtgaagcttttatcagaccatccatt-tctcgcttttatattgtacaacttcaatactgcagacattcttgtgaatttgctgcaac 130383  T
219 cttcatacaatggtgtctctgcatcaattactaccctctcaaacattttaggacaatcacggagatcatcttcaattacattcagaatttcttcaactcg 318  Q
    | || || |||||| |||||| |||| | || |  ||||||||||||| |||||||||  | ||||| ||||||| |||||  || ||||| ||||||||    
130384 catcgtataatggtttctctgaatcactaaccaatctctcaaacatttcaggacaatcctgaagatcttcttcaactacatctagcatttcgtcaactcg 130483  T
319 atca 322  Q
    ||||    
130484 atca 130487  T

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