View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20466_low_9 (Length: 232)
Name: NF20466_low_9
Description: NF20466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20466_low_9 |
 | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 39991825 - 39992028
Alignment:
| Q |
1 |
accctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39991825 |
accctctcttcccctttcatctcatctttttt--ctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcatttc |
39991922 |
T |
|
| Q |
101 |
ttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
39991923 |
ttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatctggatttttgtttcagatgtttgttcatatggaac |
39992022 |
T |
|
| Q |
201 |
aatact |
206 |
Q |
| |
|
|||||| |
|
|
| T |
39992023 |
aatact |
39992028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 21816685 - 21816645
Alignment:
| Q |
41 |
ccaatctgatacccattcctctatttcactctctgccaaac |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21816685 |
ccaatctgatacccattcctctatttcactctctgcgaaac |
21816645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 13809774 - 13809966
Alignment:
| Q |
35 |
ctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaac |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13809774 |
ctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatcccagaaaacaacataaac |
13809873 |
T |
|
| Q |
134 |
aattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
13809874 |
aattttcttcttagggcaatttttattgtatctggatttttgtttcagatgtttgttcatatgggacaatacttcaacatgttaacctcactc |
13809966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 7190887 - 7190697
Alignment:
| Q |
39 |
ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaa |
135 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7190887 |
ctccaatctgatatccatattcctctatttcactctctaccaaacacaaaattatcatcatcttcgtttcaaacacaatcccagaaaacaacataaacaa |
7190788 |
T |
|
| Q |
136 |
ttttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7190787 |
ttttcttcttgcggcaatttttactgtatctgaatttttgtttcagatgtttgttcataagggacaatacttcaacatgttcatctcactc |
7190697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14817590 - 14817364
Alignment:
| Q |
1 |
accctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-tt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14817590 |
accctctcttcccctttcatttcatcttttttttctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcatctt |
14817491 |
T |
|
| Q |
100 |
cttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaa |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| | |||||||||||||||| | |
|
|
| T |
14817490 |
cttttcaaacataatcccagaaaacaacataaacaattttcttcttggggaaatttttattgtatctgaatttttgtttaagatgtttgttcatatggga |
14817391 |
T |
|
| Q |
200 |
caatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
14817390 |
caatacttcaacatgttcacctcactc |
14817364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14828149 - 14828375
Alignment:
| Q |
1 |
accctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-tt |
99 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
14828149 |
accctctcttcccctttcatttcatcttttttttctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcatctt |
14828248 |
T |
|
| Q |
100 |
cttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaa |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| | |||||||||||||||| | |
|
|
| T |
14828249 |
cttttcaaacataatcccagaaaacaacataaacaattttcttcttggggaaatttttattgtatctgaatttttgtttaagatgtttgttcatatggga |
14828348 |
T |
|
| Q |
200 |
caatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
14828349 |
caatacttcaacatgttcacctcactc |
14828375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9311919 - 9311695
Alignment:
| Q |
1 |
accctctcttcccctttcatctcatcnnnnnnnnctttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-tt |
99 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9311919 |
accctctcttcccctttcatctcatcttttttt--tttctccattctgatactcattcctctatttcactctctgccaaacacaaaattacaatcacctt |
9311822 |
T |
|
| Q |
100 |
cttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaa |
199 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
9311821 |
cttttcaaacacaatcccaaaaaacaacataaacaattttcttcttggggcaatttttattgtatctggatttttgtttcagatgtttgttcatatggga |
9311722 |
T |
|
| Q |
200 |
caatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
9311721 |
taatacttcaacatgttcacctcactc |
9311695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 19718588 - 19718399
Alignment:
| Q |
39 |
ctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
19718588 |
ctccaatctgatactcattcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatcccaaaaaacaacataaacaatt |
19718489 |
T |
|
| Q |
138 |
ttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatat-ggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
19718488 |
ttcttcttggaacaatttttattgtatctggatttttgtttcagatgtttgttcatatggggacaatacttcaacatgttcacctcactc |
19718399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 46015049 - 46015241
Alignment:
| Q |
36 |
tttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaa-caacataaac |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
46015049 |
tttctccaatctgatacccattcctatatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatccctgaaaaacaacataaac |
46015148 |
T |
|
| Q |
134 |
aattttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
46015149 |
aattttcttcttggggcaatttttattgtatctggatttttgtttcagatgtttgttcatatgggacaatacttcaacatgttaacctcactc |
46015241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 2939506 - 2939316
Alignment:
| Q |
39 |
ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaa |
135 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| | ||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2939506 |
ctccaatctgatacctatattcctctatttcactctataccaaacacaaaattatcatcatcttcgttttaaacacaaacccagaaaacaacataaacaa |
2939407 |
T |
|
| Q |
136 |
ttttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||||||||| |||||||| | ||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
2939406 |
ttttcttcttgtggcaattttgactgtatctggatttttgtttcagatgtttgttcataagggacaatacttcaacatgttcacctcactc |
2939316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 33332553 - 33332725
Alignment:
| Q |
55 |
attcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaattttcttcttggagcaat |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
33332553 |
attcctctatttcactctctgccaaacacaaaattatcatcatcttcgtgtcaaacacaatcctagaaaacaacataaacaatttccttgttgtggcaat |
33332652 |
T |
|
| Q |
154 |
ttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||||||| | || |||||||||||||||||||| ||||||| |
|
|
| T |
33332653 |
ttttactgtatctggatttttgtttcagatgtttgttcacaagggacaatacttcaacatgttcacctcactc |
33332725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 11039442 - 11039251
Alignment:
| Q |
36 |
tttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaaca |
134 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
11039442 |
tttctccaatctaatactcattcctctatttcactctctgccaaacacaaaattacaatcatcttcttttcaaacacaatcccaaaaaacaacataaata |
11039343 |
T |
|
| Q |
135 |
attttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
11039342 |
attttcttcttggggcaatttttattgtatatggatttttgtttcagatgtttgttcatatggcacaatacttcaacatgttcacctcactc |
11039251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 17971136 - 17971327
Alignment:
| Q |
36 |
tttctccaatctgatacccattcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaaca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||| ||| | |||||||||||||||||||||| |
|
|
| T |
17971136 |
tttctccaatctgatacccattcctctatttcaccctctgccaaacacaaaattatcatcatcttcgtttaaaaaaaaatcccagaaaacaacataaacg |
17971235 |
T |
|
| Q |
135 |
attttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||| || ||||||||| |||||||||| ||||||| |
|
|
| T |
17971236 |
attttcttcttgtggcaatttttactgtatctggatttttgtttcagatgtttgttcataagggacaatactttaacatgttcacctcactc |
17971327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 71025 - 71215
Alignment:
| Q |
39 |
ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaa |
135 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
71025 |
ctccaatttgatacccatattcctctatttcactctctgccaaacacaaaattatcatcatcttcgtttcaaacacaatcctagaaaacaacataaacaa |
71124 |
T |
|
| Q |
136 |
ttttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
| ||||||||| |||||||||| ||||||| || |||||||||| ||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
71125 |
tattcttcttgtggcaatttttactgtatctagacttttgtttcagatgtttgttcataagggacaatacttcaacatgttcacctcactc |
71215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 45087959 - 45087769
Alignment:
| Q |
39 |
ctccaatctgatacccat--tcctctatttcactctctgccaaacacaaaattacaatcat-ttcttttcaaacacaatcccagaaaacaacataaacaa |
135 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45087959 |
ctccaatctaatacccatattcctctatttcactctttgccaaacacaaaattatcatcatcttcgtttcaaacacaatcccagaaaacaacataaacaa |
45087860 |
T |
|
| Q |
136 |
ttttcttcttggagcaatttttattgtatcttgatttttgtttcaaatgtttgttcatatggaacaatacttcaacatgttcatctcactc |
226 |
Q |
| |
|
||| ||| ||| |||||||||| ||||||| ||||||||||||| ||||||||||| | || |||||||||||||||||||| ||||||| |
|
|
| T |
45087859 |
tttccttgttgtggcaatttttactgtatctggatttttgtttcagatgtttgttcacaagggacaatacttcaacatgttcacctcactc |
45087769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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