View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20467_high_11 (Length: 365)

Name: NF20467_high_11
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20467_high_11
NF20467_high_11
[»] chr1 (1 HSPs)
chr1 (6-348)||(30459418-30459760)
[»] chr2 (1 HSPs)
chr2 (204-328)||(1813035-1813159)
[»] chr5 (4 HSPs)
chr5 (204-329)||(33501660-33501785)
chr5 (243-347)||(19821474-19821578)
chr5 (250-328)||(5687846-5687924)
chr5 (250-296)||(29819766-29819812)
[»] chr3 (4 HSPs)
chr3 (204-328)||(54227721-54227845)
chr3 (258-328)||(54226972-54227042)
chr3 (249-338)||(32107981-32108070)
chr3 (226-298)||(24084991-24085063)
[»] chr8 (1 HSPs)
chr8 (233-311)||(103826-103904)
[»] chr4 (1 HSPs)
chr4 (243-299)||(54137797-54137853)


Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 348
Target Start/End: Complemental strand, 30459760 - 30459418
Alignment:
Q  6 agtgataagagtgagcactgcatccaaacaaacaaccatcagcataaaaactcatttagtaaatatcctgggctaagatatatattgaccagcctacatg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30459760 agtgataagagtgagcactgcatccaaacaaacaaccatcagcataaaaactcatttagtaaatatcctgggctaagatatatattgaccagcctacatg 30459661  T
Q  106 atttaaaatcaaagtaaaaatttaacatggcaaacttgaaaatgtctgtcgtgatattagtatttaacatataccactgtgtgtgaacatgtcagagtag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30459660 atttaaaatcaaagtaaaaatttaacatggcaaacttgaaaatgtctgtcgtgatattagtatttaacatataccactgtgtgtgaacatgtcagagtag 30459561  T
Q  206 tgtagttagtatcccacgtttcccacaatacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagt 305  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30459560 tgtagttactatcccacgtttcccacgatacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagt 30459461  T
Q  306 atcccaggcgtatctcatgtatcgtgggcgtatcgcatgtatc 348  Q
    |||||||||||||| ||||||||||||||||||| ||||||||    
T  30459460 atcccaggcgtatcccatgtatcgtgggcgtatcacatgtatc 30459418  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 1813159 - 1813035
Alignment:
Q  204 agtgtagttagtatcccacgtttcccacaatacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaata 303  Q
    ||||||||||||||| || || |||||| ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||| ||     
T  1813159 agtgtagttagtatctcatgtatcccacgatacgtatcccgatacgatacgaagacagccatgggcgatacgtatcagggtctgtatcccaaatgacatt 1813060  T
Q  304 gtatcccaggcgtatctcatgtatc 328  Q
    | |||||||| ||||| ||||||||    
T  1813059 gcatcccaggtgtatcccatgtatc 1813035  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 33501660 - 33501785
Alignment:
Q  204 agtgtagttagtatcccacgtttcccacaatacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaata 303  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||| ||||| || |||||||||||| |||||||| | ||||||| |||||||||| ||     
T  33501660 agtgtagttagtatctcacgtatcccaagatacgtatcccgatacgatacaaaaacagccatgggcgatacgtattacggtctgtatcccaaatgacatt 33501759  T
Q  304 gtatcccaggcgtatctcatgtatcg 329  Q
    |||||| ||||||||| |||||||||    
T  33501760 gtatcctaggcgtatcccatgtatcg 33501785  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 19821578 - 19821474
Alignment:
Q  243 cgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagtatcccaggcgtatctcatgtatcgtgggcgtatcgca 342  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||| || | ||||| |||||||||||||||||| ||| ||||  ||    
T  19821578 cgatacgatacgaaaacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgcatccccggcgtatctcatgtatcgcgggtgtatgcca 19821479  T
Q  343 tgtat 347  Q
    |||||    
T  19821478 tgtat 19821474  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 328
Target Start/End: Complemental strand, 5687924 - 5687846
Alignment:
Q  250 atacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagtatcccaggcgtatctcatgtatc 328  Q
    ||||||| |||||||||||  |||||||||||||||||| ||||||||||  | ||||  |||||||||| ||||||||    
T  5687924 atacgaaaacagccatgggggatacgtatcagggtctgtatcccaaatgatgttgtattgcaggcgtatcccatgtatc 5687846  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 29819812 - 29819766
Alignment:
Q  250 atacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaa 296  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||||    
T  29819812 atacgaaaacagccatgggcgatacgtatcagggtctgtatcccaaa 29819766  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 54227845 - 54227721
Alignment:
Q  204 agtgtagttagtatcccacgtttcccacaatacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaata 303  Q
    |||||||| |||| |||| || |||||| ||||||||||| ||| |||| ||| |||||||||||| |||||||||||||||||| ||||||||||        
T  54227845 agtgtagtaagtaccccatgtatcccacgatacgtatcccaatacgatatgaaaacagccatgggcgatacgtatcagggtctgtatcccaaatgaccat 54227746  T
Q  304 gtatcccaggcgtatctcatgtatc 328  Q
    ||||  |||||||||| ||||||||    
T  54227745 gtatagcaggcgtatcccatgtatc 54227721  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 54227042 - 54226972
Alignment:
Q  258 acagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagtatcccaggcgtatctcatgtatc 328  Q
    |||||||||||| |||||||||||||||||| |||||||||| || ||||||||| |||||| ||||||||    
T  54227042 acagccatgggcgatacgtatcagggtctgtatcccaaatgacattgtatcccagacgtatcccatgtatc 54226972  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 32107981 - 32108070
Alignment:
Q  249 gatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagtatcccaggcgtatctcatgtatcgtgggcgtat 338  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||| |||||    ||||| |||||||||| |||||||||  |||||||    
T  32107981 gatatgaaaacagccatgggcgatacgtatcagggtctgtgtcccgaatgactatgtatcgcaggcgtatcccatgtatcgccggcgtat 32108070  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 24085063 - 24084991
Alignment:
Q  226 tcccacaatacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatg 298  Q
    |||||||||| ||||||||||| |||| ||| ||||| |||| | ||| |||||||||||||| |||||||||    
T  24085063 tcccacaatatgtatcccgatacgatatgaaaacagcaatggccgatatgtatcagggtctgtatcccaaatg 24084991  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 103904 - 103826
Alignment:
Q  233 atacgtatcccgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatgaaatagtatccca 311  Q
    |||||||||| |||| |||| ||| |||||||||||| |||||||||||||||||| |||||||||| || ||||||||    
T  103904 atacgtatcctgatacgatatgaaaacagccatgggcgatacgtatcagggtctgtatcccaaatgacattgtatccca 103826  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 54137853 - 54137797
Alignment:
Q  243 cgataggatacgaatacagccatgggcaatacgtatcagggtctgtgtcccaaatga 299  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| ||| || |||||||    
T  54137853 cgatacgatacgaaaacagccatgggcaatacatatcagggtatgtatcgcaaatga 54137797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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