View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_high_13 (Length: 353)
Name: NF20467_high_13
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 30460284 - 30459949
Alignment:
| Q |
18 |
gcaccaagattctcaatgcagctaataacatttaatgttagtgatggaaaacacnnnnnnngcgcttcaagaatttccaatgatgtccaaataaatcaac |
117 |
Q |
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| T |
30460284 |
gcaccaagattctcaatgcagctaataatatttaatgttagtgatggaaaacacaaaaaaagcgcttcaagaatttccaatgatgtctaaataaatcaac |
30460185 |
T |
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| Q |
118 |
aatgtcaagtagaaaaatgtatgtgaatgtacgataagatcaaccaggaaactggcatgttagaatcaggggacagttctctgttcttttccagatgaaa |
217 |
Q |
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| T |
30460184 |
tatgtcaagtagaaaaatgtacatgaatgtacgataagatcaaccaggaaactggcatgttagaatcaggggacagttctctgttcttttccagatgaaa |
30460085 |
T |
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| Q |
218 |
gaaagatatgaaaaataagtgtaaaattaggtgaaagtacttgtaaagacccaagataacagtttcatacttttcaggaaagtgaatgctactgatgttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30460084 |
gaaagatatgaaaaataagtgtaaaattaggtgaaagtacttgtaaagactcaagataacagtttcatacttttcaggaaagtgaatgctactgatgttg |
30459985 |
T |
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| Q |
318 |
gaaccacgttggccaaaaaatatatgaagtttactt |
353 |
Q |
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| T |
30459984 |
gaaccacgttggccaaaaaatatatgaagtttactt |
30459949 |
T |
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