View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_high_16 (Length: 329)
Name: NF20467_high_16
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 38736460 - 38736761
Alignment:
| Q |
18 |
tgttctgttaacgtgtttaacaacatgacagatgtaaacgatgtttcttggaatgcaatgatttctgggtttacctcaaatggtttatacttacaagcat |
117 |
Q |
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| T |
38736460 |
tgttctgttaacgtgtttaacaacatgacagatgtaaacgatgtttcttggaatgcaatgatttctgggtttacctcaaatggtttatacttacaagcat |
38736559 |
T |
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| Q |
118 |
ttgattttctcatcaacatgattgaaaatggggtgtcgcctaataaaaccacctttttatgtatatccaaggcagttgggcttttaggtgacattaacaa |
217 |
Q |
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| T |
38736560 |
ttgattttctcatcaacatgattgaaaatggggtgtcgcctaataaaaccacctttttatgtatatccaaggcagttgggcttttaggtgacattaacag |
38736659 |
T |
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| Q |
218 |
gtgtcatgaagttcacaggtatgcttatgaatggggattggatagcaatacttcagttggaacagctcttattaatatgtactctaagtgcggggttctg |
317 |
Q |
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| T |
38736660 |
gtgtcatgaagttcacaggtatgcttatgaatggggattggatagcaatacttcagttggaacagctcttattaatatgtactctaagtgcggggttctg |
38736759 |
T |
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| Q |
318 |
tg |
319 |
Q |
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| T |
38736760 |
tg |
38736761 |
T |
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