View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_high_2 (Length: 589)
Name: NF20467_high_2
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 48013608 - 48013184
Alignment:
| Q |
19 |
ataaaatcctatttcgaattctatttggatagtgattattctaagaattatgtgcacatgactttgttgttgatgctataggatttggaatctgattgca |
118 |
Q |
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| T |
48013608 |
ataaaatcctatttcgaattctatttggatagtgattattctaagaattatgtgcacatgactttgttgttgatgctataggatttggtatctgattgca |
48013509 |
T |
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| Q |
119 |
tgtggattaataaaatcccagtcaactgcaccgtgccctnnnnnnntttt---cacattctaccactcatat------------atttccaccttccaca |
203 |
Q |
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| T |
48013508 |
tgtggattaataaaatcccagtcaactgcaccgtgccctaaatttttttttttcacattctaccactcatattatccgctctatatttccaccttccaca |
48013409 |
T |
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| Q |
204 |
cacacgnnnnnnnntctannnnnnnaaaggaagactctacttttttaccatagaaccaaacacatgcatgcttaagatcttgatcacctataaatatgca |
303 |
Q |
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| T |
48013408 |
cacacgaaaaaaaatctatttttttaaaggaagactctacttttttaccatagaaccaaacacatgcatgcttaagatcttaatcacctata----tgca |
48013313 |
T |
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| Q |
304 |
taaatggtgatattggtaatgtaccagtacagctgtagagactatacaaaacaacaagaggaatggattctatttctctagtgctatcttttaaccacgt |
403 |
Q |
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| T |
48013312 |
taaatggtgatattggtaatgtaccagtacagctgtagagactatacaacacaacaagaggaatggattctatttctctagtgctatcttttaaccacgt |
48013213 |
T |
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| Q |
404 |
cacataattaatgagtcacatgaaataaa |
432 |
Q |
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| T |
48013212 |
cacataattaatgagtcacatgaaataaa |
48013184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 455 - 574
Target Start/End: Complemental strand, 48013184 - 48013065
Alignment:
| Q |
455 |
accacatactatgccaaacactatgcaccgtttatattcaaaatagcatgatatannnnnnnccttatttgtgttgcgaatcaggtttgtaatgtacctt |
554 |
Q |
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| T |
48013184 |
accacatactatgccaaacactatgcaccgtttatattcaaaatagcatgatatgtttttttccttatttgtgctgcgaatcaggtttgtaatgtacctt |
48013085 |
T |
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| Q |
555 |
atcaaatctttttattggag |
574 |
Q |
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| T |
48013084 |
atcaaatctttttattggag |
48013065 |
T |
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