View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_high_23 (Length: 212)
Name: NF20467_high_23
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 10279209 - 10279394
Alignment:
| Q |
18 |
gattgagaaggagatttgaaggaacatacatacgtatacgtttgagtttgaacactattttttgaaccctattttctgttcaacgctattatcaaaaacg |
117 |
Q |
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| T |
10279209 |
gattgagaaggagatttgaaggaacatacatacgtatacgtttgagtttgaacactattttttgaaccctattttctgttcaacgctattatcaaaaacg |
10279308 |
T |
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| Q |
118 |
gagtacaatgtttacccgcatcct---aaacattattgtactcttaatcaattgaatcacaatcttcaaattagtgttatattctt |
200 |
Q |
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| T |
10279309 |
gagtacaatgtttacccgcatcctatcaaacattattgtactcttaatcaattgaatcacaatcttcaaattagtgttatattctt |
10279394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 10267414 - 10267465
Alignment:
| Q |
17 |
agattgagaaggagatttgaaggaacatacatacgtatacgtttgagtttgaa |
69 |
Q |
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| T |
10267414 |
agattgagaaggagatttgaagggacatacat-cgtatacatttgagtttgaa |
10267465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 10266070 - 10266126
Alignment:
| Q |
142 |
aaacattattgtactcttaatcaattgaatcacaatcttcaaattagtgttatattct |
199 |
Q |
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| T |
10266070 |
aaacattatcgtactct-aatcaattgaatcacaatcttctaataagtgctatattct |
10266126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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