View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_high_8 (Length: 382)
Name: NF20467_high_8
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 37124503 - 37124867
Alignment:
| Q |
1 |
taaagataacacacaggatcgtaaattatcaagatcatgtttgtttaagtttgagttcttcagggaacctttt-atatctactgggttggcaattctact |
99 |
Q |
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| T |
37124503 |
taaagataacacacaggatcgtaaatcatcaagatcatgtttgtttaagtttgagttcttcagggaacctttttatatctactgtgttggcaattctact |
37124602 |
T |
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| Q |
100 |
atgatcatcaataaaaaatatattcagtcaaaggaataaacgaacatgtgatcgnnnnnnnnn--tattgcaacgacaataagtgaggattattgagaat |
197 |
Q |
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| T |
37124603 |
atgatcatcaataaaaaatatattcagtcaaaggaataaacgaacatgtgatcgaaaaaaaaaaatattgcaacaacaataagtgaggattattgagaat |
37124702 |
T |
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| Q |
198 |
ttagattagattacctgagagagatgtataagcaagcaaatacgcgaagaatggaagacgatgtttgttctgttctgagtcacagaggaaactcaacatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37124703 |
ttagattagattacctgagagagatgtataagcaagcaaatacgcgaagaatggaagacgatgtttgttctgttctgagtcacagaggaaactcaacatt |
37124802 |
T |
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| Q |
298 |
taattggaggagcaggcaatatgttatggtgacacgtggacggccagaacaacgattgcatcttg |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37124803 |
taattggaggagcaggcaatatgttatggtgacacgtggacggccagaacaacgattgcatcttg |
37124867 |
T |
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