View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20467_low_1 (Length: 928)
Name: NF20467_low_1
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 656; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 79 - 919
Target Start/End: Complemental strand, 28217625 - 28216780
Alignment:
| Q |
79 |
ttcttgtaccgaaatcattttcgataactctggatggcacaagtttcctttgtattgggagagggaacctgcctatctcaaagacttcgattatgataag |
178 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28217625 |
ttcttgtactgaaatcattttcgataactctggatggcacaagtttcctttgtattgggagagggaacctgcctatctcaaagactttgattatgataag |
28217526 |
T |
|
| Q |
179 |
tttgaccgaatccgagagatatgcagtaaaattcttagagacttttgttcccataagctgtaaggacttgatagataatgaatttgatgttaatggactc |
278 |
Q |
| |
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|| ||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
28217525 |
tt-gaccgaatctgagagatatgcagtaaaattctt---gtcttttgttcccataagctgcaaggacttgatagataatgaatttaatgttaatgtactc |
28217430 |
T |
|
| Q |
279 |
cagaatttacttcataaatattttttgccgatgtttcaataatgtcttttttgagcttgtgcatttgcatgttgttatgtaggaagaatgtcaccgctaa |
378 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
28217429 |
cagaatttacttcataaattttttttgccgatgtttcaataatgtcttttttaagcttgtggatttgcatgttgttatgtaggaagaatgtctccgctaa |
28217330 |
T |
|
| Q |
379 |
atgacgccgagttcaagacctatttggcaaaggctagagaaaagagagccacaattttgcaatctggtgccgctgaagcaaaattggacgttagtggtgt |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28217329 |
atgacgccgagttcaagacctatttggcaaaggctagagaaaagagagccacagttttgcaatctggtgccgctgaagcaaaattggacgttagtggtgt |
28217230 |
T |
|
| Q |
479 |
tacaatctgcaagctcaagagaaaaggtggggggaactcagaggaggggtcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaa |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
28217229 |
tacaatctgcaagctcaagagaaaaggtgggggaaactcagaggaggggtcaccgtcactttcagacacagaacctattgctgcaccacc-tttgaacaa |
28217131 |
T |
|
| Q |
579 |
tgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaaaagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagca |
678 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
28217130 |
tgattccgctgcatgcgattctaaggtggttcttcctttacctaggaaaaagattaagaaggagaagacgtgtgtcccaatggaagagactgaaaaagca |
28217031 |
T |
|
| Q |
679 |
tcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatctaagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaagg |
778 |
Q |
| |
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|||||| |||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
28217030 |
tcgctgtgggacaggtgttttgatggaatgggttttgtggacagcaatctaagcttcacaaaa-atgtgcaggaggtgaaggagtctgggttggaaaagg |
28216932 |
T |
|
| Q |
779 |
ctagtgatatgcttgtgg-----------cgctctgctttacttgggaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccg |
867 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28216931 |
ctagtgagatgcttgtggcatacaaccttcgctgtgctttacttcggaaggtgattacggaccaatttcaatctgtattgggacatgaaagcaaccgccg |
28216832 |
T |
|
| Q |
868 |
agacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatattctt |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28216831 |
agacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatattctt |
28216780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 18 - 919
Target Start/End: Complemental strand, 28238545 - 28237652
Alignment:
| Q |
18 |
tttctaaacatgaacatagtaaaatgaccgaaatgcacatgacattgttcctgcatggtttttcttgtaccgaaatcattttcgataactctggatggca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28238545 |
tttctaaacatgaacatagtaaaatgaccgaaatgcacatgacattgttcctgcatggtttttcttgtaccgaaatcattttcgataactctggatggca |
28238446 |
T |
|
| Q |
118 |
caagtttcctttgtattgggagagggaacctgcctatctcaaagacttcgattatgataagtttgaccgaatccgagagatatgcagtaaaattcttaga |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
28238445 |
caagtttcctttctattgggagagggaacctgcctatctcaaaggctttgattaggataagtt-gaccgaatccgagagatatgcagtaaaattcttaga |
28238347 |
T |
|
| Q |
218 |
gacttttgttcccataagctgtaaggacttgatagataatgaatttgatgttaatggactccagaatttacttcataaatattttttgccgatgtttcaa |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| | |
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|
| T |
28238346 |
gacttttgttcccataagttgtaaggacttgatagataacgaatttgatgctgatggactccagaatttacttcataaattttttttgccgatgtttcga |
28238247 |
T |
|
| Q |
318 |
taatgtcttttttgagcttgtgcatttgcatgttgttatgtaggaagaatgtcaccgctaaatgacgccgagttcaagacctatttggcaaaggctagag |
417 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||| |||| ||||| |
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|
| T |
28238246 |
taatgtcttttttaagcttgtgcatttgcatgttgttatgtaggaagaatgtctccactaaatgaagaggagttcaagacctatttggcgaaggatagag |
28238147 |
T |
|
| Q |
418 |
aaaagagagccacaattttgcaatctggtgccgctgaagcaaaattggacgttagtggtgttacaatctgcaagctcaagagaaaaggtggggggaactc |
517 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28238146 |
aaaagagagccacagtgttgcaatctggtgatgctgaagcaaacttggacgttagtggtgttgcaatctgcaagctcaagagaaaaggtgggggaaactc |
28238047 |
T |
|
| Q |
518 |
agaggaggggtcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttccttt |
617 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
28238046 |
aaaggaggggtcaccgtcactttcagacgcagaacctattgctgcacaacc-tttgaacaatgaggccgctgcatgcgattctaaggctgttcttccttc |
28237948 |
T |
|
| Q |
618 |
atctaggaaaaagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtg |
717 |
Q |
| |
|
| ||||||||| ||||||||||||||| || ||||||||||| ||||||||| |||| |||| || |||||||| | ||||||| |
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|
| T |
28237947 |
acctaggaaaaggattaagaaggagaa-acttgtgtcccaat----------------gcatcgctgtgggatgggaggtttgatggaatggattttgtg |
28237865 |
T |
|
| Q |
718 |
gacagcaatctaagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctt |
806 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| |
|
|
| T |
28237864 |
gacagaaatctatgcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaagctagtgagatgcttgtggcgtacaaccttcgctctgctt |
28237765 |
T |
|
| Q |
807 |
tacttgggaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagc |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28237764 |
tacttgggaaggtgattatggaccaatttcaatctgtactaggacatgaaagcaactgccaagacgaactgaatgcaaccaaagaaaaattgaaaatagc |
28237665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 325 - 919
Target Start/End: Complemental strand, 28233427 - 28232823
Alignment:
| Q |
325 |
ttttttgagcttgtgcatttgcatgttgttatgtaggaagaatgtcaccgctaaatgacgccgagttcaagacctatttggcaaaggctagagaaaagag |
424 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28233427 |
ttttttaagcttgtacatttgcatgttattatgcaggaagaatgtctccgctaaatgaagccgagttcaagacctatttggctaaggctagagaaaagag |
28233328 |
T |
|
| Q |
425 |
agccacaattttgcaatctggtgccgctgaagcaaaattggacgttagtggtgttacaatctgcaagctcaagagaaaaggtggggggaactcagaggag |
524 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| || | |||| || | |
|
|
| T |
28233327 |
agccacggttttgcaatctggtgctgctgaagcaaaattggacgttagtagtgttacaatccgcaaactcaaaagaaaaggtggcggaagctcaaagaat |
28233228 |
T |
|
| Q |
525 |
gggtcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctagg |
624 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||| | | ||||||||| ||| |||||||| |||||||||||||||| ||| | ||||| |
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|
| T |
28233227 |
gggccaccgtcactttcagacaaagaacctattgctgcacca-cgtttgaacaacatggcagctgcatgtggttctaaggtggttctttcttcacctagg |
28233129 |
T |
|
| Q |
625 |
aaaaagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagca |
724 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
28233128 |
aaaaggattaagaaggagaagacttgtgtcccaatggaagggactgatatagcatcgctgtgggacaggaggttcgatggaatgggttttgtggacagca |
28233029 |
T |
|
| Q |
725 |
atctaagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttgg |
813 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||| || ||||||| ||||||||||||||||| |
|
|
| T |
28233028 |
atctaagcttcacaaaagacgtgcaggaggtgaaggagtctgggttggaaaaagctggtgagattcttgtggcgtacagccttcgctctgctttacttgg |
28232929 |
T |
|
| Q |
814 |
gaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgat |
913 |
Q |
| |
|
||||||||||| ||||||||| ||| || || |||||||| | |||||| ||| ||||||||||| ||||||||||| |||||| ||||||||||||||| |
|
|
| T |
28232928 |
gaaggtgattacggaccaattccaagctttagtgggacatcatagcaactgccaagacgaactgattgcaaccaaaggaaaattgaaaatagccaatgat |
28232829 |
T |
|
| Q |
914 |
attctt |
919 |
Q |
| |
|
| |||| |
|
|
| T |
28232828 |
actctt |
28232823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 28219591 - 28219526
Alignment:
| Q |
18 |
tttctaaacatgaacatagtaaaatgaccgaaatgcacatgacattgttcctgcatggtttttctt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28219591 |
tttctaaacatgaacatagtaaaatgaccgaaatgcacatgacattgttcctgcatggtttttctt |
28219526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 28233481 - 28233430
Alignment:
| Q |
126 |
ctttgtattgggagagggaacctgcctatctcaaagacttcgattatgataa |
177 |
Q |
| |
|
|||||| |||||||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
28233481 |
ctttgtgttgggagagggagcctgcctatatcaaaggattcgattatgataa |
28233430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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