View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_low_11 (Length: 375)
Name: NF20467_low_11
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 10111752 - 10112080
Alignment:
| Q |
10 |
aagaatatcggatcgaattatacgtggtttgacttggttcagctttttacacaaacaaatataaatactagcaaataatacaaatatttgattttaatta |
109 |
Q |
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| T |
10111752 |
aagaaaatcggatcgaattatatgtggtttgacttggttcagctttttacacaaacaaatataaatactagtaaataatataaatattttattttaatta |
10111851 |
T |
|
| Q |
110 |
gtaattcattatttatgtcaatgtaagtgacttaataacaaccatgaccacccct-aaaaaacaccatgaccttttctaatnnnnnnnnnngccatga-c |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| | |
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| T |
10111852 |
gtaattcattatttatgtcaatgtaagtgacttaataacaaccatgaccacccctaaaaaaacaccttgaccttttctaataaaaaaaaaagccatgacc |
10111951 |
T |
|
| Q |
208 |
atcccct-nnnnnnnnccatgaccatatcaaccacatccatgtttaagaagcatgcttatctcaattgcatctgtatttcgtgactaaatactaaaagta |
306 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10111952 |
atcccctaaaaataaaccattaccatatcaaccacatccatgtttaagaagcatgcttatctcaattgcatctgtatttcgtgactaaacactaaaagta |
10112051 |
T |
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| Q |
307 |
tgcatgaattggtgaaacatatgaatagt |
335 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10112052 |
tgcatgaattggtgaaacatatgaatagt |
10112080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 335
Target Start/End: Original strand, 10045970 - 10046300
Alignment:
| Q |
10 |
aagaatatcggatcgaattatacgtggtttgacttggttcagctttttacacaaacaaatataaatactagcaaataatacaaatatttgattttaatta |
109 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||| |
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| T |
10045970 |
aagaaaatcggatcgaattatatgtggtttgacttggttcagcttttaacacaaacaaatataaatactagtaaataatataaatattctattttaatta |
10046069 |
T |
|
| Q |
110 |
gtaattcattatttatgtcaatgtaagtgacttaataacaaccatgaccacccct-aaaaaacaccatgaccttttctaat--nnnnnnnnnngccatga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |
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| T |
10046070 |
gtaattcattatttatgtcaatgtaagtgacttaataacaaccatgaccacccctaaaaaaacaccttgaccttttctaataaaaaaaaaaaagccatga |
10046169 |
T |
|
| Q |
207 |
-catcccct-nnnnnnnnccatgaccatatcaaccacatccatgtttaagaagcatgcttatctcaattgcatctgtatttcgtgactaaatactaaaag |
304 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10046170 |
ccatcccctaaaaataaaccatgaccatatcaaccacatccatgtttaagaagcatgcttatctcaattgcatctgtatttcgtgactaaacactaaaag |
10046269 |
T |
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| Q |
305 |
tatgcatgaattggtgaaacatatgaatagt |
335 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10046270 |
tatgcatgaattggtgaaacatatgaatagt |
10046300 |
T |
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