View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20467_low_13 (Length: 353)

Name: NF20467_low_13
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20467_low_13
NF20467_low_13
[»] chr4 (4 HSPs)
chr4 (11-353)||(10782299-10782641)
chr4 (11-159)||(5529028-5529177)
chr4 (54-158)||(11520536-11520640)
chr4 (40-91)||(13587856-13587908)
[»] chr3 (6 HSPs)
chr3 (40-195)||(27853923-27854080)
chr3 (39-128)||(20885790-20885879)
chr3 (49-159)||(22245888-22245998)
chr3 (54-159)||(820923-821028)
chr3 (125-159)||(16221955-16221989)
chr3 (54-102)||(314709-314757)
[»] chr1 (8 HSPs)
chr1 (54-159)||(26810460-26810565)
chr1 (42-159)||(17442814-17442932)
chr1 (121-160)||(28008704-28008743)
chr1 (121-159)||(17120970-17121008)
chr1 (121-159)||(18100474-18100512)
chr1 (121-159)||(25960628-25960666)
chr1 (54-91)||(16787149-16787186)
chr1 (42-102)||(17837886-17837947)
[»] chr7 (7 HSPs)
chr7 (11-140)||(13708088-13708218)
chr7 (75-156)||(5798099-5798180)
chr7 (54-163)||(15612081-15612190)
chr7 (54-159)||(11218691-11218796)
chr7 (11-102)||(5530723-5530815)
chr7 (40-91)||(9721589-9721641)
chr7 (70-102)||(10649927-10649959)
[»] chr6 (4 HSPs)
chr6 (54-163)||(9726593-9726700)
chr6 (54-102)||(9291479-9291527)
chr6 (54-91)||(2587364-2587401)
chr6 (54-115)||(22564371-22564432)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-163)||(14851-15005)
[»] chr8 (5 HSPs)
chr8 (31-246)||(5855593-5855811)
chr8 (11-90)||(30486867-30486947)
chr8 (11-159)||(15064723-15064871)
chr8 (54-159)||(17977198-17977303)
chr8 (56-102)||(24381220-24381266)
[»] chr2 (6 HSPs)
chr2 (33-159)||(25348591-25348718)
chr2 (54-159)||(45553720-45553825)
chr2 (54-201)||(25939679-25939828)
chr2 (32-100)||(41789974-41790043)
chr2 (42-159)||(21072158-21072276)
chr2 (54-216)||(26291602-26291766)
[»] scaffold0672 (1 HSPs)
scaffold0672 (42-159)||(4462-4580)
[»] chr5 (6 HSPs)
chr5 (34-201)||(23265674-23265844)
chr5 (42-159)||(19762660-19762778)
chr5 (11-154)||(26314273-26314417)
chr5 (54-98)||(24164445-24164489)
chr5 (63-158)||(35984860-35984957)
chr5 (11-159)||(26066719-26066868)
[»] scaffold0019 (1 HSPs)
scaffold0019 (54-102)||(183888-183936)
[»] scaffold0128 (1 HSPs)
scaffold0128 (121-159)||(63-101)
[»] scaffold0043 (1 HSPs)
scaffold0043 (122-163)||(89321-89362)
[»] scaffold0360 (1 HSPs)
scaffold0360 (54-118)||(17540-17604)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 10782641 - 10782299
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaactattaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttct 110  Q
    ||||| |||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10782641 taatattgatgcatatctgctaaaatctggaagcaactattagtaattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttct 10782542  T
Q  111 ttcacctcaataaggtagacactaatagggctgctcgtttgtagaactatcgaaagagagtatgatatatgcttttaatattcatagatgaaaggacctt 210  Q
    |||||||| ||||| |||||| | |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  10782541 ttcacctcgataagatagacattgataaagctgctcgtttgtagaactatcgaaagagagtatgatatatgcttctaatattcatagatggaaggacctt 10782442  T
Q  211 gaggaagatcgagattacaatgttggcaatttaggacaatggttaatttacaatatgttaaaatatttttacattaatttacaatatttatcattcaaga 310  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  10782441 taggaagatcgagattacaatgttggcaatttaggacaatggttaatttacaatatgttaaaatatctttacattaatctacaatatttatcattcaaga 10782342  T
Q  311 cattagcctaagagtagattttaaatgacgaggcaatactcct 353  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10782341 cattagcctaagagtagattttaaatgacgaggcaatactcct 10782299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 5529177 - 5529028
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttc 109  Q
    ||||| |||||||||| |||| | ||  ||||||||||| |||  ||||||| ||||||| |||||||||||||||||||   |||||| |||  |||||    
T  5529177 taatattgatgcatatatgctgagattaggaagtaactagttagcaattaagtaaacaggcgacttcatgacttaaatcaatccagtaattccattcttc 5529078  T
Q  110 tttcacctcaataaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    ||||||||   ||||||| || ||||||||||| | ||||||| ||||||    
T  5529077 tttcaccttggtaaggtaaacgctaatagggctacccgtttgttgaacta 5529028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 11520536 - 11520640
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| |||||  |||||| | ||||| ||||||| ||||||||||  ||||||| |||||   |||||||||| || |||||| || |||||||||    
T  11520536 taattaaggaaacaattgacttaacgacttcaatcagcccagtaactccattcttcttgcacctttctaaggtagacgctgatagggttgttcgtttgta 11520635  T
Q  154 gaact 158  Q
    |||||    
T  11520636 gaact 11520640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 13587908 - 13587856
Alignment:
Q  40 gaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagc 91  Q
    |||||||||| ||| |||||||||||||||  ||||||| |||||||||||||    
T  13587908 gaagtaactagttagtaattaagaaaacagacgacttcacgacttaaatcagc 13587856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 27853923 - 27854080
Alignment:
Q  40 gaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatag 138  Q
    |||||||||| ||| ||||| || |||||||| |||||| |||||||||||||  ||||||||| ||| ||||||||||  ||||||||||| |||||||    
T  27853923 gaagtaactagttagtaatttaggaaacaggttacttcacgacttaaatcagcctagtaactccactcatctttcaccttgataaggtagacgctaatag 27854022  T
Q  139 ggctgctcgtttgtagaactatcga-aagagagtatgatatatgcttttaatattcat 195  Q
    |||| |||||||||||||||||||| | |||||| || ||| ||||| ||| ||||||    
T  27854023 ggcttctcgtttgtagaactatcgagaggagagtgtgttatgtgcttctaagattcat 27854080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 20885879 - 20885790
Alignment:
Q  39 ggaagtaactattaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtag 128  Q
    ||||||||||| ||||||||||| ||||| ||||||||| |||| |||||||| |||||||||| ||||| |||||||||  ||||||||    
T  20885879 ggaagtaactagtaataattaaggaaacaagtgacttcacgactgaaatcagcccagtaactccactcttttttcacctcggtaaggtag 20885790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 22245998 - 22245888
Alignment:
Q  49 attaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgt 148  Q
    |||| |||||||| |||||  |||||||| ||||||||||||||||||||||||  ||| || ||||||   | ||||||||||| |||||||| | |||    
T  22245998 attagtaattaaggaaacaattgacttcacgacttaaatcagctcagtaactccattctcctctcaccttggtgaggtagacactgatagggctacccgt 22245899  T
Q  149 ttgtagaacta 159  Q
    |||||||||||    
T  22245898 ttgtagaacta 22245888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 820923 - 821028
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| |||||||||  |||||||||||| ||||||||||  ||||||| ||| |   |||||||||| || |||| ||| | ||||||||    
T  820923 taattaaggaaacaagtgacttcacaacttaaatcagcccagtaactccattcttcttgcacattcgtaaggtagacgctgatagagcttcccgtttgta 821022  T
Q  154 gaacta 159  Q
    ||||||    
T  821023 gaacta 821028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 16221989 - 16221955
Alignment:
Q  125 gtagacactaatagggctgctcgtttgtagaacta 159  Q
    ||||||||| |||||||||||||||||||||||||    
T  16221989 gtagacactgatagggctgctcgtttgtagaacta 16221955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 314757 - 314709
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 102  Q
    |||||||| ||||| ||||||||||||||||||| ||  ||||||||||    
T  314757 taattaaggaaacaagtgacttcatgacttaaattagtccagtaactcc 314709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 26810565 - 26810460
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||||||||| ||| ||||||||||||||||| |  ||||||||||||||| ||||||| |  ||||||||||| | ||| | |||| ||||||||    
T  26810565 taattaagaaaacatgtgccttcatgacttaaatcaacctagtaactccgctcttttttcaccacggtaaggtagacattgataagactgcccgtttgta 26810466  T
Q  154 gaacta 159  Q
    ||||||    
T  26810465 gaacta 26810460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 17442932 - 17442814
Alignment:
Q  42 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 140  Q
    |||||||| ||| |||||||||||||||||||||||| ||||||||| ||| ||||||||  | | |||||| ||||   |||||||||| || ||||||    
T  17442932 agtaactagttagtaattaagaaaacaggtgacttcaggacttaaataagcccagtaactttgtttttcttttaccttggtaaggtagacgctgataggg 17442833  T
Q  141 ctgctcgtttgtagaacta 159  Q
     | | ||||||||||||||    
T  17442832 tttcccgtttgtagaacta 17442814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 28008743 - 28008704
Alignment:
Q  121 taaggtagacactaatagggctgctcgtttgtagaactat 160  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  28008743 taaggtagacactgatagggctgcccgtttgtagaactat 28008704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 17120970 - 17121008
Alignment:
Q  121 taaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  17120970 taaggcagacactaataggggtgctcgtttgtagaacta 17121008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 18100474 - 18100512
Alignment:
Q  121 taaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  18100474 taaggtagacactgatagggctgcttgtttgtagaacta 18100512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 25960628 - 25960666
Alignment:
Q  121 taaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  25960628 taaggtagacactgatagggctgctagtttgtagaacta 25960666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 16787149 - 16787186
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagc 91  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  16787149 taattaaggaaacaagtgacttcatgacttaaatcagc 16787186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 17837947 - 17837886
Alignment:
Q  42 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 102  Q
    |||||||| ||| |||||||| ||||| ||||||||| ||||||||||| | ||||||||||    
T  17837947 agtaactagttagtaattaaggaaacaagtgacttcacgacttaaatcatcccagtaactcc 17837886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 13708218 - 13708088
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttc 109  Q
    ||||| ||||| |||| ||||| || | ||||||||||| ||| ||||| || ||| | ||||||||| ||||||||| |||||||||||||| |||||     
T  13708218 taatattgatgtatatatgctagaaccaggaagtaactagttagtaattgaggaaataagtgacttcacgacttaaataagctcagtaactccactcttg 13708119  T
Q  110 tttcacctcaataaggtagacactaataggg 140  Q
    ||||||||   ||||||||||||| ||||||    
T  13708118 tttcaccttggtaaggtagacactgataggg 13708088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 5798180 - 5798099
Alignment:
Q  75 tcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgtagaa 156  Q
    ||||||||||||| |||  ||||||||||| ||| |||||||||| ||| |||||| ||||||| | ||| |||||||||||    
T  5798180 tcatgacttaaattagcaaagtaactccgcccttatttcacctcagtaaagtagacgctaatagtgttgcccgtttgtagaa 5798099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 15612081 - 15612190
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| ||||||| |  |||||||||| ||| ||||||||  | |||||||||||   ||| |||||| || |||||||| | ||||||||    
T  15612081 taattaaggaaacatgtgactttacaacttaaatcaactcggtaactccatttttctttcaccttggtaaagtagacgctgatagggctacccgtttgta 15612180  T
Q  154 gaactatcga 163  Q
    ||||||||||    
T  15612181 gaactatcga 15612190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 11218691 - 11218796
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| | ||||||||||||||||||||| |||| |||||  ||| ||  |||||   ||||||| || || |||||||| | ||||||||    
T  11218691 taattaaggaaacaagcgacttcatgacttaaatcagcccagttactccattctcctcgcaccttggtaaggtatacgctgatagggcttcccgtttgta 11218790  T
Q  154 gaacta 159  Q
    ||||||    
T  11218791 gaacta 11218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 5530815 - 5530723
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 102  Q
    ||||| ||||||| || |||| ||||| || |||||||| ||| |||||||| ||||| ||| ||||| ||||||||||||| || |||||||    
T  5530815 taatattgatgcaaatctgctgaaatcaggcagtaactagttagtaattaaggaaacaagtggcttcacgacttaaatcagcccaataactcc 5530723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 9721641 - 9721589
Alignment:
Q  40 gaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagc 91  Q
    |||||||||| ||| |||||||||||||||  ||||||| |||||||||||||    
T  9721641 gaagtaactagttagtaattaagaaaacagacgacttcacgacttaaatcagc 9721589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 10649959 - 10649927
Alignment:
Q  70 tgacttcatgacttaaatcagctcagtaactcc 102  Q
    ||||||||||||||||||||||||||| |||||    
T  10649959 tgacttcatgacttaaatcagctcagtgactcc 10649927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 9726700 - 9726593
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| ||||||||| ||||||| ||||  ||  ||||||  |||||||||||||  ||||||||||| || |||||||||| ||||||||    
T  9726700 taattaaggaaacatgtgacttcacgacttaactcagaccacgaactccattcttctttcacct--ataaggtagacgctgatagggctgcccgtttgta 9726603  T
Q  154 gaactatcga 163  Q
    ||||||||||    
T  9726602 gaactatcga 9726593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 9291479 - 9291527
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 102  Q
    |||||||| ||||| ||||||||||||||||||||||| || |||||||    
T  9291479 taattaaggaaacaagtgacttcatgacttaaatcagcccaataactcc 9291527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 2587401 - 2587364
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagc 91  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  2587401 taattaaggaaacaagtgacttcatgacttaaatcagc 2587364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 22564371 - 22564432
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcac 115  Q
    |||||||| ||||| |||| |||| ||||||||||||| || ||||||| | ||||||||||    
T  22564371 taattaagcaaacatgtgatttcacgacttaaatcagcacaataactccacccttctttcac 22564432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 14851 - 15005
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaactatt--aataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctctt 108  Q
    ||||| |||||||||| |||||||||| |||| | |||| |  | |||||||| ||||| |||||||||  || |||||||||   |||||| |||||||    
T  14851 taatattgatgcatatatgctaaaatcaggaattcactagttgagtaattaaggaaacatgtgacttcacaacctaaatcagccatgtaacttcgctctt 14950  T
Q  109 ctttcacctcaataaggtagacactaatagggctgctcgtttgtagaactatcga 163  Q
    ||||||||||  |||||||||  || |||||| ||   |||||||||||||||||    
T  14951 ctttcacctcggtaaggtagatgctgatagggatgactgtttgtagaactatcga 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 246
Target Start/End: Complemental strand, 5855811 - 5855593
Alignment:
Q  31 taaaatctggaagtaactattaa-taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtaga 129  Q
    ||||||| |||| |||||||| | |||||||| ||||| |||||||   ||||||||| ||| ||||||||||||| ||||||||||||  |||||| ||    
T  5855811 taaaatcaggaattaactatttagtaattaaggaaacaagtgactttgcgacttaaattagcccagtaactccgcttttctttcacctcggtaaggtgga 5855712  T
Q  130 cactaatagggctgctcgtttgtagaactatcgaaa--gagagtatgatatatgcttttaatattcatagatgaaaggaccttgaggaagatcgagatta 227  Q
    | ||  || || ||| ||||||||||||||  || |  |||||| || ||| ||||| ||| ||||||| |||   ||||||| | |||||||| || ||    
T  5855711 cgctggtaaggttgcccgtttgtagaactactgagagggagagtgtgttatgtgcttctaagattcataaatggtcggacctttatgaagatcgggacta 5855612  T
Q  228 caatgttggcaatttagga 246  Q
    || || ||| |||||||||    
T  5855611 cactgatggaaatttagga 5855593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 30486947 - 30486867
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcag 90  Q
    ||||| |||| ||||| |||| ||||| || |||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  30486947 taatattgattcatatctgctgaaatcaggtagtaactaattagtaattaagaaaacacgtgacttcatgacttaaatcag 30486867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 15064723 - 15064871
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttc 109  Q
    ||||| ||||| |||| ||| ||||||  |||||||||| ||| |||| | ||||||||| ||||||| |||||| ||||||  || | |||| ||||||    
T  15064723 taatattgatgtatatctgcaaaaatcaagaagtaactagttagtaatga-gaaaacaggcgacttcacgacttagatcagcctagcatctccactcttc 15064821  T
Q  110 tttcacctcaataaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    |||||||    |||||||||| || ||| ||||||  |||||||||||||    
T  15064822 tttcaccatggtaaggtagacgctgataaggctgcctgtttgtagaacta 15064871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 17977303 - 17977198
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||| ||||||| ||||||||| |||||||||||||  |||||||||  ||| ||| |||||   ||||| |||| || |||||||| | ||||||||    
T  17977303 taattatgaaaacaagtgacttcacgacttaaatcagcctagtaactccattctccttgcaccttggtaaggcagacgctgatagggcttcccgtttgta 17977204  T
Q  154 gaacta 159  Q
     |||||    
T  17977203 aaacta 17977198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 24381220 - 24381266
Alignment:
Q  56 attaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 102  Q
    |||||| ||||| |||||||||||||||||||||||  |||||||||    
T  24381220 attaagtaaacaagtgacttcatgacttaaatcagccaagtaactcc 24381266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 25348718 - 25348591
Alignment:
Q  33 aaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagaca 131  Q
    ||||| ||||||||||| ||| |||||   || ||||||||||||| ||||||||||||| |||||||| |  ||| ||   |||||  ||||||||||     
T  25348718 aaatcaggaagtaactagttagtaatttgaaagacaggtgacttcacgacttaaatcagcccagtaacttcattctcctcgaacctcggtaaggtagacg 25348619  T
Q  132 ctaatagggctgctcgtttgtagaacta 159  Q
    || |||||||||||||||||||||||||    
T  25348618 ctgatagggctgctcgtttgtagaacta 25348591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 45553825 - 45553720
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||  ||| ||  |||||   |||||||| | || |||||||||| | ||||||    
T  45553825 taattaaggaaacaagtgacttcatgacttaaatcagcacagtaactccattctcctcacaccttggtaaggtagtcgctgatagggctgcccatttgta 45553726  T
Q  154 gaacta 159  Q
    ||||||    
T  45553725 gaacta 45553720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 25939828 - 25939679
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| ||||||||||||||||||| ||  |||||| |||  ||| |||||||||   |||||||||| || ||||| || | ||||||||    
T  25939828 taattaaggaaacatgtgacttcatgacttaaataagtccagtaattccattctcctttcaccttggtaaggtagacgctgataggtctccccgtttgta 25939729  T
Q  154 gaactatcgaaa--gagagtatgatatatgcttttaatattcatagatga 201  Q
    |||||| ||| |  |||||| |  ||| | ||||||| ||||||||||||    
T  25939728 gaactaccgagagggagagtgttctatgttcttttaagattcatagatga 25939679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 41789974 - 41790043
Alignment:
Q  32 aaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaact 100  Q
    |||||| ||||||||||| ||| |||||||  ||||| ||||||||||||||||| ||||||||||||||    
T  41789974 aaaatcaggaagtaactagttagtaattaatgaaacatgtgacttcatgacttaactcagctcagtaact 41790043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 21072158 - 21072276
Alignment:
Q  42 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 140  Q
    |||||||| ||| ||||| || ||||| |||||||||||||||||||||||  |||||||||  ||| ||   |||||  |||||||||   | ||||||    
T  21072158 agtaactagttagtaattgaggaaacaagtgacttcatgacttaaatcagcctagtaactccattctcctcatacctcggtaaggtagatgatgataggg 21072257  T
Q  141 ctgctcgtttgtagaacta 159  Q
    ||| ||||| |||||||||    
T  21072258 ctggtcgttagtagaacta 21072276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 216
Target Start/End: Complemental strand, 26291766 - 26291602
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgta 153  Q
    |||||||| ||||| ||||||||| ||||||||||||| || |||||||  ||| ||  ||| |   |||||||||| || |||||||||   |||||||    
T  26291766 taattaaggaaacaagtgacttcacgacttaaatcagcccaataactccattctcctcacactttggtaaggtagacgctcatagggctgtcagtttgta 26291667  T
Q  154 gaactatc--gaaagagagtatgatatatgcttttaatattcatagatgaaaggaccttgaggaa 216  Q
     ||||| |  ||| |||||| || ||| | ||| ||| |||||||||||| || ||||| |||||    
T  26291666 aaactaccgagaaggagagtgtgttatgtacttctaagattcatagatgagagaacctttaggaa 26291602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 4580 - 4462
Alignment:
Q  42 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 140  Q
    |||||||| ||| |||||||| ||||| ||||||||||||||||||||||| || ||||| |  ||| ||  |||||  ||||||||||  |||||||||    
T  4580 agtaactagttagtaattaaggaaacaagtgacttcatgacttaaatcagcccaataacttcattctcctcgcaccttgataaggtagatgctaataggg 4481  T
Q  141 ctgctcgtttgtagaacta 159  Q
    |||| ||| ||||||||||    
T  4480 ctgcccgtgtgtagaacta 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 23265844 - 23265674
Alignment:
Q  34 aatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacac 132  Q
    |||| ||||||| ||| ||| |||||||| ||||| ||||||||| ||||||||||||| || ||||| |  ||| |||||||||   |||||||||       
T  23265844 aatcaggaagtagctagttactaattaaggaaacatgtgacttcacgacttaaatcagcccaataacttcattctcctttcaccttggtaaggtagatgt 23265745  T
Q  133 taatagggctgctcgtttgtagaactatcgaaa--gagagtatgatatatgcttttaatattcatagatga 201  Q
    | |||||| |||||||||||||||||| ||| |  |||||| || ||| ||||| ||| |||| |||||||    
T  23265744 tgatagggttgctcgtttgtagaactaccgagatggagagtgtgttatgtgcttctaagattcgtagatga 23265674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 19762660 - 19762778
Alignment:
Q  42 agtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctcaataaggtagacactaataggg 140  Q
    |||||||| ||| |||||||| ||||| ||||||||| | ||||||||||| || |||||||  ||||||| |||||   |||||||||| || ||||||    
T  19762660 agtaactagttagtaattaaggaaacaagtgacttcacgtcttaaatcagcccaataactccattcttcttgcaccttggtaaggtagacgctgataggg 19762759  T
Q  141 ctgctcgtttgtagaacta 159  Q
    |||  |||||| |||||||    
T  19762760 ctgtccgtttggagaacta 19762778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 26314417 - 26314273
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttc 109  Q
    ||||| ||||||| || |||| |||||||| ||||| || ||| |||||||| ||||| |||||||||  |||||||||||   || ||||||  ||| |    
T  26314417 taatattgatgcagatctgctgaaatctggtagtaagtagttagtaattaaggaaacaagtgacttcacaacttaaatcagtctagcaactccattctcc 26314318  T
Q  110 tttcacctcaataaggtagacactaatagggctgctcgtttgtag 154  Q
    |  ||||| | |||||||||| || |||||||||| |||||||||    
T  26314317 tcgcaccttagtaaggtagacgctgatagggctgcccgtttgtag 26314273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 24164445 - 24164489
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaa 98  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||    
T  24164445 taattaaggaaacaagtgacttcatgacttaaatcagcccagtaa 24164489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 35984860 - 35984957
Alignment:
Q  63 aaacaggtgacttcatgacttaaatcagctcagtaact--ccgctcttctttcacctcaataaggtagacactaatagggctgctcgtttgtagaact 158  Q
    ||||| ||||||||||| ||||||||||| ||  ||||  || |||||||||||||| | |||| ||||| || |||||| ||| ||||||| |||||    
T  35984860 aaacaagtgacttcatggcttaaatcagcccaacaactttccactcttctttcaccttagtaagatagacgctgatagggttgcccgtttgttgaact 35984957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 26066868 - 26066719
Alignment:
Q  11 taatactgatgcatatgtgctaaaatctggaagtaacta-ttaataattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttc 109  Q
    ||||| ||||| | || |||| ||||| || |||||||| ||| || ||||| ||||| || |||||| ||||||||||||   |||||||||  ||| |    
T  26066868 taatattgatgaaaatatgctgaaatcaggtagtaactaattagtacttaaggaaacaagttacttcacgacttaaatcagtgtagtaactccattctcc 26066769  T
Q  110 tttcacctcaataaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    |  |||||   |||| ||||| || |||||||||| ||||||||||||||    
T  26066768 tcgcaccttggtaagttagacgctgatagggctgcccgtttgtagaacta 26066719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 183888 - 183936
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactcc 102  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  183888 taattaaggaaacaagtgacttcatgacttaaatcagcccagtaactcc 183936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 63 - 101
Alignment:
Q  121 taaggtagacactaatagggctgctcgtttgtagaacta 159  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  63 taaggtagacactaatagggcttcccgtttgtagaacta 101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 89321 - 89362
Alignment:
Q  122 aaggtagacactaatagggctgctcgtttgtagaactatcga 163  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  89321 aaggtagacagtaatagggctgcccgtttgtggaactatcga 89362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 17540 - 17604
Alignment:
Q  54 taattaagaaaacaggtgacttcatgacttaaatcagctcagtaactccgctcttctttcacctc 118  Q
    |||||||| ||||| ||||||||  ||| ||||| ||| || |||||||||| ||||||||||||    
T  17540 taattaaggaaacaagtgacttcgcgacataaattagcccaataactccgcttttctttcacctc 17604  T

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