View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20467_low_15 (Length: 343)

Name: NF20467_low_15
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20467_low_15
NF20467_low_15
[»] chr2 (7 HSPs)
chr2 (1-325)||(25048556-25048880)
chr2 (9-66)||(23891773-23891830)
chr2 (273-311)||(24393278-24393316)
chr2 (273-311)||(34903550-34903588)
chr2 (264-311)||(27152386-27152433)
chr2 (266-311)||(2939766-2939811)
chr2 (264-312)||(3243361-3243409)
[»] chr5 (7 HSPs)
chr5 (272-311)||(3222764-3222803)
chr5 (264-312)||(2530043-2530091)
chr5 (264-311)||(11017209-11017256)
chr5 (265-311)||(22498975-22499020)
chr5 (266-312)||(31958451-31958497)
chr5 (266-311)||(31708129-31708174)
chr5 (264-312)||(790127-790175)
[»] chr4 (12 HSPs)
chr4 (9-69)||(33362352-33362412)
chr4 (265-311)||(3580747-3580793)
chr4 (265-311)||(11144647-11144693)
chr4 (273-311)||(11166719-11166757)
chr4 (265-311)||(43034324-43034370)
chr4 (265-311)||(47806238-47806284)
chr4 (265-310)||(11314639-11314684)
chr4 (283-311)||(19124622-19124650)
chr4 (264-312)||(20681154-20681202)
chr4 (283-311)||(44221480-44221508)
chr4 (264-312)||(49125504-49125552)
chr4 (264-312)||(51187576-51187624)
[»] chr1 (12 HSPs)
chr1 (265-311)||(35778183-35778229)
chr1 (265-312)||(24473619-24473666)
chr1 (264-315)||(43124311-43124362)
chr1 (265-311)||(3481594-3481640)
chr1 (266-312)||(23730362-23730408)
chr1 (281-311)||(41950082-41950112)
chr1 (265-311)||(47528429-47528475)
chr1 (266-311)||(4859116-4859161)
chr1 (265-310)||(21638147-21638192)
chr1 (279-311)||(28039856-28039888)
chr1 (283-311)||(29251787-29251815)
chr1 (264-312)||(46040552-46040600)
[»] chr7 (5 HSPs)
chr7 (266-311)||(46987119-46987164)
chr7 (273-312)||(38049303-38049342)
chr7 (273-311)||(25923424-25923462)
chr7 (266-311)||(23069840-23069885)
chr7 (264-312)||(20135142-20135190)
[»] scaffold1694 (1 HSPs)
scaffold1694 (265-307)||(192-234)
[»] chr6 (2 HSPs)
chr6 (265-311)||(21865416-21865462)
chr6 (264-312)||(6018640-6018688)
[»] chr3 (8 HSPs)
chr3 (273-311)||(14771364-14771402)
chr3 (273-311)||(27397602-27397640)
chr3 (274-311)||(20400110-20400147)
chr3 (274-311)||(30200859-30200896)
chr3 (264-313)||(51614240-51614289)
chr3 (263-311)||(25505682-25505729)
chr3 (264-312)||(38361711-38361759)
chr3 (264-312)||(41990830-41990878)
[»] scaffold0354 (1 HSPs)
scaffold0354 (265-302)||(7202-7239)
[»] scaffold1074 (1 HSPs)
scaffold1074 (5-69)||(639-703)
[»] chr8 (1 HSPs)
chr8 (264-312)||(38139271-38139319)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 25048556 - 25048880
Alignment:
Q  1 aacgcatatattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaagtaggactgattcattttcgattagacacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25048556 aacgcatatattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaagtaggactgattcattttcgattagatacaa 25048655  T
Q  101 gtttggttcgggcttgatcaattaagagaagtccttgttaaatttgatgaatcattgatctattaagggagattatatatcgaaaattagttgttaaccg 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  25048656 gtttggttcgggctcgatcaattaagagaagtccttgttaaatttgatgaatcattgatccattaagggagatcatatatcgaaaattagttgttaaccg 25048755  T
Q  201 aatccgtaagaacggaaaaaattatgggtttttcccaaaacaatttcaagaatggcaattgtaattttttgggtggtatccggggttcgaacctcagacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25048756 aatccgtaagaacggaaaaaattatgggtttttcccaaaacaatttcaagaatggcaattgtaattttttgggtggtattcggggttcgaacctcagacc 25048855  T
Q  301 ttgcatatattttttgggtggtatc 325  Q
    |||||||||||||||||||||||||    
T  25048856 ttgcatatattttttgggtggtatc 25048880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 23891773 - 23891830
Alignment:
Q  9 tattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatccc 66  Q
    ||||||||||||| |||||||||||||||||| ||| |||| ||||||||||||||||    
T  23891773 tattaattttgagaattatcgacttaattgacagatgtaaggaattagggttcatccc 23891830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 24393316 - 24393278
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  24393316 gtggtgtccggggttcgaacctcagaccttgcatatatt 24393278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 34903588 - 34903550
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34903588 gtggtgtccggggttcgaacctcagaccttgcatatatt 34903550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 27152433 - 27152386
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||||| |||||| ||| ||||||||||| |||||||||||||||||    
T  27152433 atttttttggtggtgtcctgggttcgaaccccagaccttgcatatatt 27152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 2939766 - 2939811
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||| | ||||||||||||||| |||||||||||||||||    
T  2939766 ttttttggtgatgtccggggttcgaaccccagaccttgcatatatt 2939811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 3243361 - 3243409
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  3243361 atttttttggtggtgtccggggttcgaacccgcgaccttgcatatattt 3243409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 311
Target Start/End: Complemental strand, 3222803 - 3222764
Alignment:
Q  272 ggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3222803 ggtggtatccggggttcgaacctcagaccttgcatatatt 3222764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 2530091 - 2530043
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| ||||||||||||||||  ||||||||||||||||    
T  2530091 atttttttggtggtgtccggggttcgaacctgcgaccttgcatatattt 2530043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 11017256 - 11017209
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||||    
T  11017256 atttttttggcggtgtccgggattcgaacctcagaccttgcatatatt 11017209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 22499020 - 22498975
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  22499020 ttttttggatggtgtccggggttcgaacc-cagaccttgcatatatt 22498975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 31958451 - 31958497
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||| |||||| ||||||||||||||| | ||||||||||||||||    
T  31958451 ttttttggtggtgtccggggttcgaaccccggaccttgcatatattt 31958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 31708129 - 31708174
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||| |||| |||||||||| |||||||||||||||||    
T  31708129 ttttttggtggtgtccgaggttcgaaccccagaccttgcatatatt 31708174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 790127 - 790175
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| | ||||||||||||||  ||||||||||||||||    
T  790127 atttttttggtggtgttcggggttcgaacctgcgaccttgcatatattt 790175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 33362412 - 33362352
Alignment:
Q  9 tattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaa 69  Q
    ||||||||||||| |||||||| ||||||||| ||| |||  |||||||||||||||||||    
T  33362412 tattaattttgagaattatcgaattaattgacagatgtaacgaattagggttcatcccaaa 33362352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 3580793 - 3580747
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||| |||||| ||||||||||||| | |||||||||||||||||    
T  3580793 tttttttggtggtgtccggggttcgaatcccagaccttgcatatatt 3580747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 11144647 - 11144693
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||| |||||| |||||||||| |||| |||||||||||||||||    
T  11144647 tttttttggtggtgtccggggttcaaaccccagaccttgcatatatt 11144693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 11166757 - 11166719
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  11166757 gtggtgtccggggttcgaaccttagaccttgcatatatt 11166719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 43034324 - 43034370
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||| ||||||  |||||||| |||||||||||||||||||||||    
T  43034324 tttttttggtggtggccggggtttgaacctcagaccttgcatatatt 43034370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 47806238 - 47806284
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||| |||||| | ||||||||||||| |||||||||||||||||    
T  47806238 tttttttggtggtgttcggggttcgaaccccagaccttgcatatatt 47806284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 11314639 - 11314684
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatat 310  Q
    |||||| |||||| ||||||||| ||||||| ||||||||||||||    
T  11314639 tttttttggtggtgtccggggtttgaacctcggaccttgcatatat 11314684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Original strand, 19124622 - 19124650
Alignment:
Q  283 gggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||||||||||||||||||||||    
T  19124622 gggttcgaacctcagaccttgcatatatt 19124650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 20681202 - 20681154
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| ||||||||| ||||||  ||||||||||||||||    
T  20681202 atttttttggtggtgtccggggtttgaacctgcgaccttgcatatattt 20681154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 44221508 - 44221480
Alignment:
Q  283 gggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||||||||||||||||||||||    
T  44221508 gggttcgaacctcagaccttgcatatatt 44221480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 49125552 - 49125504
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  49125552 atttttttggtggtgtccggggttcgaacccgcgaccttgcatatattt 49125504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 51187624 - 51187576
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  51187624 atttttttggtggtgtccggggttcgaacccgggaccttgcatatattt 51187576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 35778183 - 35778229
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||    
T  35778183 tttttttggtggtggccggggttcgaacctcagaccttgcatatatt 35778229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 24473619 - 24473666
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||||||||| |||||||||||||||   ||||||||||||||||    
T  24473619 ttttttgggtggtgtccggggttcgaacccgcgaccttgcatatattt 24473666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 43124362 - 43124311
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatatttttt 315  Q
    |||||||  ||||| | |||||||||||||| ||||||||||||||||||||    
T  43124362 attttttttgtggtgtacggggttcgaacctaagaccttgcatatatttttt 43124311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 3481640 - 3481594
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||||||  |||||||| ||||| |||||||||||||||||    
T  3481640 ttttttgggtggtggccggggtttgaaccccagaccttgcatatatt 3481594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 23730362 - 23730408
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||| |||||| ||||||||||||||| | ||||||||||||||||    
T  23730362 ttttttggtggtgtccggggttcgaaccccggaccttgcatatattt 23730408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 41950082 - 41950112
Alignment:
Q  281 cggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||||||||||||||||||||||||    
T  41950082 cggggttcgaacctcagaccttgcatatatt 41950112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 47528429 - 47528475
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  47528429 tttttttggtggtgtccggggttcgaacctcggaccttgcgtatatt 47528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 4859161 - 4859116
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| ||||||||| |||||||||||| |||||||| ||||||||    
T  4859161 ttttttggtggtatcaggggttcgaaccccagaccttacatatatt 4859116  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 21638192 - 21638147
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatat 310  Q
    |||||| |||||| ||||||||||||||| | ||||||||||||||    
T  21638192 tttttttggtggtgtccggggttcgaaccccggaccttgcatatat 21638147  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 28039856 - 28039888
Alignment:
Q  279 tccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||| ||||||||||||||||||||||    
T  28039856 tccggggttcaaacctcagaccttgcatatatt 28039888  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 29251815 - 29251787
Alignment:
Q  283 gggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||||||||||||||||||||||    
T  29251815 gggttcgaacctcagaccttgcatatatt 29251787  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 46040552 - 46040600
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  46040552 atttttttggtggtgtccggggttcgaacccgggaccttgcatatattt 46040600  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Complemental strand, 46987164 - 46987119
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||||||| ||||||||||||||| | |||||||||||||||    
T  46987164 tttttgggtggtgtccggggttcgaaccccggaccttgcatatatt 46987119  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 38049303 - 38049342
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  38049303 gtggtgtccgggattcgaacctcagaccttgcatatattt 38049342  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 25923462 - 25923424
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  25923462 gtggtatctggggttcaaacctcagaccttgcatatatt 25923424  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 23069840 - 23069885
Alignment:
Q  266 tttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||| ||||||||||||||| || ||||||||||||||    
T  23069840 ttttttggtggtgtccggggttcgaaccccataccttgcatatatt 23069885  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 20135142 - 20135190
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  20135142 atttttttggtggtgtccggggttcgaacccgggaccttgcatatattt 20135190  T

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Target: scaffold1694 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 234 - 192
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcata 307  Q
    |||||||||||||| ||| |||| |||||||||||||||||||    
T  234 ttttttgggtggtagccgaggtttgaacctcagaccttgcata 192  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 311
Target Start/End: Original strand, 21865416 - 21865462
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||||||||||| || ||||||| ||||| ||||||||||||||||    
T  21865416 ttttttgggtggtgtctggggttctaaccttagaccttgcatatatt 21865462  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 6018640 - 6018688
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  6018640 atttttttggtggtgtccggggttcgaacccacgaccttgcatatattt 6018688  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 14771402 - 14771364
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  14771402 gtggtgtccgggattcgaacctcagaccttgcatatatt 14771364  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 27397602 - 27397640
Alignment:
Q  273 gtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  27397602 gtggtgtccggggttcgaaccttagaccttgcatatatt 27397640  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 20400147 - 20400110
Alignment:
Q  274 tggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  20400147 tggtatctggggtttgaacctcagaccttgcatatatt 20400110  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 311
Target Start/End: Complemental strand, 30200896 - 30200859
Alignment:
Q  274 tggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  30200896 tggtgtccggggttcgaacctcaaaccttgcatatatt 30200859  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 51614289 - 51614240
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatatttt 313  Q
    |||||||  ||||| |||||| |||||||||| |||||||||||||||||    
T  51614289 attttttttgtggtgtccgggattcgaacctcggaccttgcatatatttt 51614240  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 25505682 - 25505729
Alignment:
Q  263 aattttttgggtggtatccggggttcgaacctcagaccttgcatatatt 311  Q
    |||||||| |||||| |||||| |||||||| |||||||||||||||||    
T  25505682 aatttttttggtggtgtccggg-ttcgaaccccagaccttgcatatatt 25505729  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 38361759 - 38361711
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  38361759 atttttttggtggtgtccggggttcgaacccgcgaccttgcatatattt 38361711  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 41990830 - 41990878
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| | |||| ||||||||||||||||  ||||||||||||||||    
T  41990830 atttttttgttggtgtccggggttcgaacctgcgaccttgcatatattt 41990878  T

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Target: scaffold0354 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 7202 - 7239
Alignment:
Q  265 ttttttgggtggtatccggggttcgaacctcagacctt 302  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  7202 ttttttgggtggtgtccggggttcgaaccccagacctt 7239  T

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Target: scaffold1074 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1074
Description:

Target: scaffold1074; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 703 - 639
Alignment:
Q  5 catatattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaa 69  Q
    ||||||| ||||||||| |||||||||||||| ||| ||| |||  || ||||||||||| ||||    
T  703 catatatcaattttgagaattatcgacttaatcgacagatgtaaagaaatagggttcatcacaaa 639  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 38139319 - 38139271
Alignment:
Q  264 attttttgggtggtatccggggttcgaacctcagaccttgcatatattt 312  Q
    ||||||| |||||| |||||||||||||||   ||||||||||||||||    
T  38139319 atttttttggtggtgtccggggttcgaacccacgaccttgcatatattt 38139271  T

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