View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_low_21 (Length: 251)
Name: NF20467_low_21
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_low_21 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 14452624 - 14452381
Alignment:
| Q |
8 |
aggagcagagattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgtta |
107 |
Q |
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| T |
14452624 |
aggaccagtgattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgtca |
14452525 |
T |
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| Q |
108 |
aaggcacaatcaattccatagcttccaaatattgtatgagcatgtgatttaaaagcatcacgaacaagagtaggcccatacaaaagtttatctcctccgc |
207 |
Q |
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| T |
14452524 |
aaggcacaatcaattccatagcttccaaatattgtatgagcatgtgatttaaaaccatcacggacaagagtaggcccatacaaaagtttatctcctccgc |
14452425 |
T |
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| Q |
208 |
ttttgccggttactccatagtccaacagcgcgtacttatcattg |
251 |
Q |
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| T |
14452424 |
ttttgccggttactccatagtccaacagcgcgtacttatcattg |
14452381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 3352336 - 3352159
Alignment:
| Q |
15 |
gagattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgttaaaggcac |
114 |
Q |
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| T |
3352336 |
gagattattttgacgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatgaatgcttcgttgttatcggtgttaaaggaac |
3352237 |
T |
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| Q |
115 |
aatcaattccatagcttccaaatattgtatgagcatgtgatttaaaagcatcacgaacaagagtaggcccatacaaaa |
192 |
Q |
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| T |
3352236 |
aatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcccatacaaaa |
3352159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 42046258 - 42046435
Alignment:
| Q |
15 |
gagattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgttaaaggcac |
114 |
Q |
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| T |
42046258 |
gagattaatttgtcgttgcaagagtatggagcatagtctattagagcacaaaaattttcatgaaagatgaatgcctggttgttatcggtgtcaaatgcac |
42046357 |
T |
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| Q |
115 |
aatcaattccatagcttccaaatattgtatgagcatgtgatttaaaagcatcacgaacaagagtaggcccatacaaaa |
192 |
Q |
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| T |
42046358 |
aatcaattgcatagctttgaaatattgtaggagcaagtgatttaaacccatcactaacaagagatggcccatgcaaaa |
42046435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 42471445 - 42471584
Alignment:
| Q |
15 |
gagattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgttaaaggcac |
114 |
Q |
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| T |
42471445 |
gagattattttgtcttcatctgactgcggagcatagtctatgagagcacaaaggttttcataaaatatgaatgcctaggtgttatccgtgtcaaaggcac |
42471544 |
T |
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| Q |
115 |
aatcaattccatagcttccaaatattgtatgagcatgtga |
154 |
Q |
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| T |
42471545 |
aatcaattccatagcttccaaatacggtatgagcaagtga |
42471584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 37392 - 37521
Alignment:
| Q |
15 |
gagattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgttaaaggcac |
114 |
Q |
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| T |
37392 |
gagattattttgtctttgtcagtttgtggaacatattctatcttagcacaaagaccttgataaaagacgaacgcctcgttgtcatcggtgtcaaaggcac |
37491 |
T |
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| Q |
115 |
aatcaattccatagcttccaaatattgtat |
144 |
Q |
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| T |
37492 |
aatctattccattgcttccaaattttgtat |
37521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 63448 - 63570
Alignment:
| Q |
15 |
gagattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatgaatgcctcgttgttatcggtgttaaaggcac |
114 |
Q |
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| T |
63448 |
gagattattttgtctttgtcagtgtgtggagtatattctatcttagcacaaagaccttgataaaagacgaacgcctcattgtcatcggtgtcaaaggcac |
63547 |
T |
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| Q |
115 |
aatcaattccatagcttccaaat |
137 |
Q |
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| T |
63548 |
aatctattccattgcttccaaat |
63570 |
T |
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