View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_low_26 (Length: 210)
Name: NF20467_low_26
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_low_26 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 33686033 - 33685839
Alignment:
| Q |
16 |
aaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacatactacgtataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33686033 |
aaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataa |
33685934 |
T |
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| Q |
116 |
ttttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33685933 |
ttttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
33685839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 33674843 - 33674650
Alignment:
| Q |
16 |
aaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacatactacgtataa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33674843 |
aaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataa |
33674744 |
T |
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| Q |
116 |
ttttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagc |
209 |
Q |
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| T |
33674743 |
ttttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaatttaatctcttgctaaaacgtagcaaactcgccgccatcaaagc |
33674650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 33664242 - 33664049
Alignment:
| Q |
17 |
aaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacatactacgtataat |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33664242 |
aaaaacactcacaaacttatcaaaccgttacaacaatggaaattgaaacaaaccaaacaatggtagttacaaagaaagtatggaacacactacgtataat |
33664143 |
T |
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| Q |
117 |
tttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
210 |
Q |
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| T |
33664142 |
tttcttcatgtttacaaaaaacattgccaaaagcaaaatggtagcagaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
33664049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 33693225 - 33693066
Alignment:
| Q |
51 |
aatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacatactacgtataattttgttcatgtttacaaaaaacatagccaaaagc |
150 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33693225 |
aatggatattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacacactacgtataattttgttcatgtttacaaaaaacattgccaaaagc |
33693126 |
T |
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| Q |
151 |
aaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
210 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
33693125 |
aaaatggtagcacaattaaatctcttgctaaaacgtggcaaactcgccgctatcaaagcc |
33693066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 103187 - 103381
Alignment:
| Q |
16 |
aaaaaacactcacaaactcatcaaaccgttacaacaatggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacatactacgtataa |
115 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||| ||||||| ||| |
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| T |
103187 |
aaaaaacacacgcaaactcatcaaaccgttacaacaatggaaattgaaacaacccaaccaatgatagtaacaaagaaagtatggaacacactacgtctaa |
103286 |
T |
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| Q |
116 |
ttttgttcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
210 |
Q |
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||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
103287 |
ttttgttaatgttaaaaaaaaacatagccaaaagcaaaaaggtagcacaattaaatctcttgctaaaacgtagcaagctcgccgctatcaaagcc |
103381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 86524 - 86712
Alignment:
| Q |
29 |
aaactcatcaaaccgttacaacaa-------tggaaattgaaacaaaccaagcaatggtagttacaaagaaagtatggaacatactacgtataattttgt |
121 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||| ||| ||||||||||||| |
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| T |
86524 |
aaactcatcaaaccgttacaacaaacaagaatggaaattgaaacaaaccaactaattatagtaacaaagaaagtatggaacacactgcgtataattttgt |
86623 |
T |
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| Q |
122 |
tcatgtttacaaaaaacatagccaaaagcaaaatggtagcacaattaaatctcttgttaaaacgtagcaaactcgccgccatcaaagcc |
210 |
Q |
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||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
86624 |
tcatgttaacaaaaaacatagctaaaagcaaaatggtagcagaattaaatctcttgctaaaacgtagcaaactcgccgccatcaaagcc |
86712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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