View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_low_4 (Length: 515)
Name: NF20467_low_4
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 27567971 - 27567538
Alignment:
| Q |
11 |
caaagggtatgaaagccgagttaaatgttataactttagcagagctagatggaacaattcgaattaactgaaaataattattcaaaacttagtgatgctt |
110 |
Q |
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| T |
27567971 |
caaaaggtatgaaagccgagttaaatgttataactttagcagagctagatggaacaattcgaattaactgaaaataattattcaaaacttagtgatgctt |
27567872 |
T |
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| Q |
111 |
aaagcagaaaataaatattacaaaaagaatctagcaacaagctgttaaagctgtttcagggaaaattgtgttgtgtttttcatgttacattttgaaatac |
210 |
Q |
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| T |
27567871 |
aaagcagaaaataaatattacaaaaagaatctagcaacaagctgttaaagctgtttcagggaaaattgtgttgtgtttttcatgttacattttgaaatac |
27567772 |
T |
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| Q |
211 |
aataacaataacttggtcaatatatccaagataatcattgcacttaatccctattaaatactgaataacttagtttatgtcaactaaaatttgataacat |
310 |
Q |
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| T |
27567771 |
aataacaataacttggtcaatatatccaagataatcattgcacttaatccctattaaatactgaataacttagtttatgtcaactaaaatttgataacat |
27567672 |
T |
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| Q |
311 |
gttcatgatactactgtaatatatattagaattcattgagatttgggaaagctatgtgtttcaacaaaatattgtgtcattaacattctcattcatgaaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27567671 |
gttcatgatactactgtaatatatattagaattcattgagatttggg-aagctatgtgtttcaacaaaatattgtgtcattaacattctcattcaggaaa |
27567573 |
T |
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| Q |
411 |
cattccctatttccgcaggaatgattaatacatgg |
445 |
Q |
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| T |
27567572 |
cattccctatttccgcaggaatgattaatacatgg |
27567538 |
T |
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