View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20467_low_7 (Length: 434)

Name: NF20467_low_7
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20467_low_7
NF20467_low_7
[»] chr6 (1 HSPs)
chr6 (55-135)||(30590592-30590672)
[»] chr4 (3 HSPs)
chr4 (324-397)||(9152109-9152182)
chr4 (214-270)||(9151996-9152052)
chr4 (23-86)||(9151928-9151994)
[»] chr2 (1 HSPs)
chr2 (54-99)||(30698184-30698229)


Alignment Details
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 30590672 - 30590592
Alignment:
Q  55 aattcctcctttgaacccttgagaaatgcatttcactttgtctacctgaagtagaacttagactttgggattccggtcaat 135  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||  ||||| |||||||||||||||||||||| |||||    
T  30590672 aattcctcctttgaaccgttgagcaatgcatttcactttatctacaagaagtggaacttagactttgggattccgatcaat 30590592  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 9152109 - 9152182
Alignment:
Q  324 ggagtctcccggatcaattttgtccgtggtgtgaaagtggtggtatgttttccatgaacttgttgacttcataa 397  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||| ||||| |||||||    
T  9152109 ggagtctcccggatcaattttgtccatggtgtgaaggtggtggtatgtttcccacgaactagttgatttcataa 9152182  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 9151996 - 9152052
Alignment:
Q  214 aaaacactagaacagcatgactaacacaacaataactaatcataacaagcttgactc 270  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  9151996 aaaacactagaacagcatgactaacaaaacaataactaatcgtaacaagcttgactc 9152052  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 9151928 - 9151994
Alignment:
Q  23 tagcaaatcagatgattttcttatttct---tgtcaattcctcctttgaacccttgagaaatgcatt 86  Q
    ||||| ||||||||||||||||||||||   |||||||||||||||||||||||| |||||| ||||    
T  9151928 tagcacatcagatgattttcttatttcttcttgtcaattcctcctttgaacccttaagaaatacatt 9151994  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 30698184 - 30698229
Alignment:
Q  54 caattcctcctttgaacccttgagaaatgcatttcactttgtctac 99  Q
    |||||||||||||| ||| ||| | |||||||||||||||||||||    
T  30698184 caattcctcctttggaccgttgtgcaatgcatttcactttgtctac 30698229  T

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