View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20467_low_8 (Length: 407)
Name: NF20467_low_8
Description: NF20467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20467_low_8 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 33674625 - 33674219
Alignment:
| Q |
1 |
ccaccactcgtccgcctcctttgtctctccccacgactatgagtttagctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccac |
100 |
Q |
| |
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|||||||||||| ||||||| ||||| ||||||||||| ||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
33674625 |
ccaccactcgtcttcctccttcgtctcaccccacgactacgagttcagctgcagcaacaaccctgccgtcattaaattccacaacaaaaataaaaaccac |
33674526 |
T |
|
| Q |
101 |
cgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctactttttcttctccttctcctttagtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674525 |
cgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctactttttcttctccttctcctttagtgg |
33674426 |
T |
|
| Q |
201 |
catttcctggatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctctaaaggaagaagaaggtgatgatcatagttatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || || |||||||| ||||||||||||||||||||| |||| |
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| T |
33674425 |
catttcctggatttggaaagagtcccattgggaaaaaaattagagtcactgattcaccttttcccctaaaggatgaagaaggtgatgatcatagtcatgt |
33674326 |
T |
|
| Q |
301 |
tgatgttgcagctgaagaattgattaaaaggtttgataaaaagctcaacttccagcaaaaataagccacgattcagtcaccttacaacaacgcccgcaat |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
33674325 |
tgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaacttgcagcaaaaattagccgcgattcagtcaccttacaacaactcccgcaat |
33674226 |
T |
|
| Q |
401 |
agataga |
407 |
Q |
| |
|
||||||| |
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| T |
33674225 |
agataga |
33674219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 33664025 - 33663616
Alignment:
| Q |
1 |
ccaccactcgtccgcctcctttgtctctccccacgactatgagtttagctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccac |
100 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | | |||||||||||||||||||||||| ||| | |
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| T |
33664025 |
ccaccactcgactgcctccttcgtctctccccacgactacgagttcagctgcagcaacagccccgccgccattaaattccacaacaaaaataataactat |
33663926 |
T |
|
| Q |
101 |
cgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctactt---tttcttctccttctcctttag |
197 |
Q |
| |
|
| || || ||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| || ||| ||||||||||||||||||||| |
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| T |
33663925 |
caccgcggccgccaccacaacgatgtttccaccattcaaaaggttctagaaattcttaatgatgttgattcttcttctttttcttctccttctcctttag |
33663826 |
T |
|
| Q |
198 |
tggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctctaaaggaagaagaaggtgatgatcatagtta |
297 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||| || |||||||| ||||||||||||||||||||| | |
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| T |
33663825 |
tgacatttcctggatttggaaaaagtcccattgggaaaaaaattagagtcgctgattcaccatttcccctaaaggatgaagaaggtgatgatcatagtca |
33663726 |
T |
|
| Q |
298 |
tgttgatgttgcagctgaagaattgattaaaaggtttgataaaaagctcaacttccagcaaaaataagccacgattcagtcaccttacaacaacgcccgc |
397 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| ||| |||||||||||||||| |||||| ||||| |
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| T |
33663725 |
tgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaacttgcagcaaaaattagctgcgattcagtcaccttataacaactcccgc |
33663626 |
T |
|
| Q |
398 |
aatagataga |
407 |
Q |
| |
|
|||||||||| |
|
|
| T |
33663625 |
aatagataga |
33663616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 33693042 - 33692701
Alignment:
| Q |
1 |
ccaccactcgtccgcctcctttgtctctccccacgactatgagtttagctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
33693042 |
ccaccactcgtccgcctcctttgtctctccccacgactatgagttcagctgcagcaacagccccgcgttcattaaattccacaacaaaaataaaaaccac |
33692943 |
T |
|
| Q |
101 |
cgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctact---ttttcttctccttctcctttag |
197 |
Q |
| |
|
| |||| | |||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
33692942 |
caccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatcctcaatgatgttgatgcttcttcattttcttctccttctcctttag |
33692843 |
T |
|
| Q |
198 |
tggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctctaaaggaagaagaaggtgatgatcatagtta |
297 |
Q |
| |
|
|| ||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| ||||| |||||||||| ||| |||||||||||||||||||| |
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| T |
33692842 |
tgacatttcctggatttggaaaaactcccattgggaaaaaaattagagtcactgattcgccatttcctctaaaggtagatgaaggtgatgatcatagtta |
33692743 |
T |
|
| Q |
298 |
tgttgatgttgcagctgaagaattgattaaaaggtttgataa |
339 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
33692742 |
tgttgatgttgcagcggaagaatttattaaaaggttttataa |
33692701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 33685815 - 33685406
Alignment:
| Q |
1 |
ccaccactcgtccgcctcctttgtctctccccacgactatgagtttagctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccac |
100 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||| ||||||||| ||| | |
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| T |
33685815 |
ccaccactcgactgcctccttcgtctctccccacgactacgagttcagctgcagcaacagccccactgccattaaattccacagcaaaaataataactat |
33685716 |
T |
|
| Q |
101 |
cgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatg---ctactttttcttctccttctcctttag |
197 |
Q |
| |
|
| || || ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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|
| T |
33685715 |
caccgcggccgccaccacaacgatgtttcaaccattcaaaaggttctagaaatcctcaatgatattgatgtttcttctttttcttctccttctcctttag |
33685616 |
T |
|
| Q |
198 |
tggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctctaaaggaagaagaaggtgatgatcatagtta |
297 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||| | |
|
|
| T |
33685615 |
tggcatttcctggttttggaaaaagtcccattgggaaaaaaattagagtcactgattctccatttcctctcaaggaagaagaaggggatgatcatagtca |
33685516 |
T |
|
| Q |
298 |
tgttgatgttgcagctgaagaattgattaaaaggtttgataaaaagctcaacttccagcaaaaataagccacgattcagtcaccttacaacaacgcccgc |
397 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||| ||||| || || ||||||| || ||||||||||||||||||||||| ||| | |
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|
| T |
33685515 |
tgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaaattgcaacaaaaattagttgcgattcagtcaccttacaacaactcccac |
33685416 |
T |
|
| Q |
398 |
aatagataga |
407 |
Q |
| |
|
|||||||||| |
|
|
| T |
33685415 |
aatagataga |
33685406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 86736 - 87129
Alignment:
| Q |
1 |
ccaccactcgtccgcctcctttgtctctccccacgactatgagtttagctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
86736 |
ccaccactcgtccgcctccttcgtctctcccaacgactacgagttcagctgcagcaacagccccgccgtcattaaattccataacaaaaataaaaaccac |
86835 |
T |
|
| Q |
101 |
cgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctactttt---tcttctccttctcctttag |
197 |
Q |
| |
|
| ||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
86836 |
catcatggccgccaccacaacgatgtttccaccattcaaaaggttctagaaatccttaatgaagttgatgcttcttttttttcttctccttctcctttag |
86935 |
T |
|
| Q |
198 |
tggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctctaaaggaagaagaaggtgatgatcatagtta |
297 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || || |||||||||| ||| |||||||||||||||||| | |
|
|
| T |
86936 |
tgacatttcctggatttggaaaaagtcccattggaaaaaaaattagagtcaccgattctccgtttcctctaaaggtagatgaaggtgatgatcatagtca |
87035 |
T |
|
| Q |
298 |
tgttgatgttgcagctgaagaattgattaaaaggtttgataaaaagctcaacttccagcaaaaataagccacgattcagtcaccttacaacaac |
391 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||| || |||||||| || ||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
87036 |
tgttgacgttgcagctgaagaatttattaaaaggttttataagaatctcaacttacaacaaaaattagcgtcgattaagtcaccttacaacaac |
87129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 103417 - 103806
Alignment:
| Q |
13 |
cgcctcctttgtctctccccacgactatgagtttagctgcagcaacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgc |
112 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||| | || ||||| |
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|
| T |
103417 |
cgcctccttcatctctcccaacgactacgagttcagctgcagcaacagccccgccgtcattaaattccttaacaaaaataaaaaccatcaccgcggctgc |
103516 |
T |
|
| Q |
113 |
caccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttgatgctacttttt---cttctccttctcctttagtggcatttcctg |
209 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||| ||||||| |||||| | ||||||||| ||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
103517 |
caccacgatgatgtttccaccattcaaaaggttttagaaattctcaataaagttgatgcttcttctttctcttctccttctcctttagtgacatttcctg |
103616 |
T |
|
| Q |
210 |
gatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctctaaaggaagaagaagg---tgatgatcatagttatgttgatgt |
306 |
Q |
| |
|
| |||||||| |||||| |||| ||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
103617 |
ggtttggaaaaagtcccgttggaaaaaaatttagagtcactgattctccatttcctctaaaggaagaagaaggtgatgatgatcatagtcatgttgatgt |
103716 |
T |
|
| Q |
307 |
tgcagctgaagaattgattaaaaggtttgataaaaagctcaacttccagcaaaaataagccacgattcagtcaccttacaacaacgcccg |
396 |
Q |
| |
|
||| ||||||||||| ||||||| |||| |||| || || ||||| || ||||||| || | ||||||||||||||||||||| |||| |
|
|
| T |
103717 |
tgcggctgaagaatttattaaaaagttttataagaatcttaacttgcaacaaaaattggcggcaattcagtcaccttacaacaactcccg |
103806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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