View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_high_10 (Length: 527)

Name: NF20469_high_10
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_high_10
NF20469_high_10
[»] chr5 (20 HSPs)
chr5 (67-517)||(24234807-24235263)
chr5 (18-70)||(29875181-29875233)
chr5 (18-73)||(23090525-23090580)
chr5 (18-68)||(12398946-12398996)
chr5 (18-72)||(34208765-34208819)
chr5 (18-68)||(42757805-42757855)
chr5 (18-68)||(4695162-4695212)
chr5 (18-62)||(4145921-4145965)
chr5 (35-70)||(42793562-42793597)
chr5 (18-68)||(22645909-22645959)
chr5 (365-445)||(333421-333502)
chr5 (35-68)||(12399190-12399223)
chr5 (35-68)||(23090298-23090331)
chr5 (35-68)||(34208538-34208571)
chr5 (36-69)||(41610372-41610405)
chr5 (35-69)||(3077596-3077630)
chr5 (35-68)||(4145694-4145727)
chr5 (35-68)||(29874954-29874987)
chr5 (35-68)||(42793040-42793073)
chr5 (365-452)||(13169708-13169796)
[»] chr3 (30 HSPs)
chr3 (18-71)||(39518634-39518687)
chr3 (18-70)||(41349369-41349421)
chr3 (18-69)||(29014689-29014740)
chr3 (18-69)||(36737833-36737884)
chr3 (18-68)||(1351996-1352046)
chr3 (18-68)||(18997194-18997244)
chr3 (18-68)||(18999733-18999783)
chr3 (18-68)||(32677477-32677527)
chr3 (18-68)||(39528976-39529026)
chr3 (18-68)||(39806979-39807029)
chr3 (18-69)||(38855544-38855595)
chr3 (18-68)||(29371538-29371588)
chr3 (18-68)||(32840176-32840226)
chr3 (18-67)||(22157485-22157534)
chr3 (35-73)||(29371782-29371820)
chr3 (18-67)||(21974376-21974425)
chr3 (18-67)||(21996807-21996856)
chr3 (35-69)||(1352240-1352274)
chr3 (35-73)||(55365903-55365941)
chr3 (35-68)||(18996967-18997000)
chr3 (35-68)||(18999506-18999539)
chr3 (35-68)||(32677721-32677754)
chr3 (35-68)||(39528749-39528782)
chr3 (35-68)||(41349615-41349648)
chr3 (365-437)||(14338933-14339004)
chr3 (36-68)||(46878980-46879012)
chr3 (35-68)||(28228436-28228469)
chr3 (35-68)||(39807223-39807256)
chr3 (35-68)||(49319347-49319380)
chr3 (18-54)||(28228665-28228701)
[»] chr1 (21 HSPs)
chr1 (18-69)||(46220486-46220537)
chr1 (18-68)||(47669346-47669396)
chr1 (18-67)||(1236071-1236120)
chr1 (18-65)||(9831730-9831777)
chr1 (18-69)||(10737700-10737751)
chr1 (18-68)||(8889670-8889720)
chr1 (18-66)||(3384597-3384645)
chr1 (18-69)||(48565044-48565095)
chr1 (21-69)||(37875726-37875774)
chr1 (35-71)||(4817266-4817302)
chr1 (35-69)||(4055483-4055517)
chr1 (18-68)||(4055711-4055761)
chr1 (26-68)||(39241387-39241429)
chr1 (35-69)||(47669118-47669152)
chr1 (35-68)||(9831503-9831536)
chr1 (35-68)||(18126851-18126884)
chr1 (35-68)||(33020206-33020239)
chr1 (35-72)||(33023428-33023465)
chr1 (18-53)||(18127077-18127112)
chr1 (35-68)||(1236274-1236307)
chr1 (35-68)||(46220259-46220292)
[»] chr8 (20 HSPs)
chr8 (18-68)||(28379174-28379224)
chr8 (18-68)||(33837729-33837779)
chr8 (18-68)||(45334276-45334326)
chr8 (18-68)||(9740213-9740263)
chr8 (18-68)||(25106438-25106488)
chr8 (18-69)||(13469507-13469558)
chr8 (18-68)||(38495472-38495522)
chr8 (18-68)||(2508796-2508846)
chr8 (18-53)||(2626253-2626288)
chr8 (35-70)||(27027655-27027690)
chr8 (35-69)||(9739984-9740018)
chr8 (35-69)||(27024432-27024466)
chr8 (35-69)||(33837973-33838007)
chr8 (35-68)||(2509040-2509073)
chr8 (21-70)||(32183479-32183528)
chr8 (35-68)||(45334520-45334553)
chr8 (35-70)||(25106209-25106244)
chr8 (35-69)||(25979003-25979037)
chr8 (35-72)||(25978714-25978751)
chr8 (35-63)||(13469749-13469777)
[»] chr7 (26 HSPs)
chr7 (18-68)||(17904390-17904440)
chr7 (18-68)||(37179331-37179381)
chr7 (18-69)||(29890825-29890876)
chr7 (18-68)||(6387692-6387742)
chr7 (18-72)||(46467331-46467385)
chr7 (18-69)||(4405336-4405387)
chr7 (18-72)||(26770406-26770460)
chr7 (18-71)||(9332548-9332601)
chr7 (18-69)||(6389951-6390002)
chr7 (18-72)||(31502649-31502702)
chr7 (18-62)||(29427170-29427214)
chr7 (35-69)||(29427408-29427442)
chr7 (35-69)||(43701550-43701584)
chr7 (35-68)||(6387936-6387969)
chr7 (35-68)||(17904163-17904196)
chr7 (35-68)||(26770179-26770212)
chr7 (35-68)||(29723381-29723414)
chr7 (35-68)||(37179575-37179608)
chr7 (35-68)||(46467579-46467612)
chr7 (364-450)||(16377879-16377966)
chr7 (36-68)||(29891071-29891103)
chr7 (36-71)||(4405106-4405141)
chr7 (18-48)||(19523813-19523843)
chr7 (35-68)||(33379211-33379244)
chr7 (23-68)||(46690095-46690140)
chr7 (21-69)||(22753067-22753115)
[»] chr6 (14 HSPs)
chr6 (18-68)||(8504733-8504783)
chr6 (18-69)||(2543308-2543359)
chr6 (18-68)||(32274661-32274711)
chr6 (18-69)||(27312113-27312165)
chr6 (18-69)||(5008358-5008409)
chr6 (21-68)||(18742176-18742223)
chr6 (35-69)||(27312360-27312394)
chr6 (35-69)||(32274433-32274467)
chr6 (35-68)||(29302515-29302548)
chr6 (35-71)||(12174697-12174733)
chr6 (18-69)||(7156236-7156287)
chr6 (35-69)||(7156469-7156503)
chr6 (18-68)||(29452542-29452592)
chr6 (35-68)||(18741947-18741980)
[»] chr2 (12 HSPs)
chr2 (18-68)||(15233982-15234032)
chr2 (18-68)||(41252643-41252693)
chr2 (18-68)||(43040849-43040899)
chr2 (18-68)||(44104546-44104596)
chr2 (35-70)||(10112337-10112372)
chr2 (18-64)||(35792911-35792957)
chr2 (36-70)||(43041094-43041128)
chr2 (35-69)||(35793150-35793184)
chr2 (371-444)||(37267751-37267825)
chr2 (35-69)||(41252414-41252448)
chr2 (35-68)||(10118696-10118729)
chr2 (35-68)||(44104800-44104833)
[»] chr4 (16 HSPs)
chr4 (18-65)||(8955779-8955826)
chr4 (18-67)||(39482089-39482138)
chr4 (20-68)||(45590971-45591019)
chr4 (18-70)||(49162315-49162367)
chr4 (18-68)||(30469213-30469263)
chr4 (18-62)||(36971275-36971319)
chr4 (35-69)||(19256185-19256219)
chr4 (35-69)||(36016278-36016312)
chr4 (35-68)||(19257104-19257137)
chr4 (35-70)||(8956020-8956055)
chr4 (35-70)||(45590740-45590775)
chr4 (35-69)||(30469412-30469446)
chr4 (372-432)||(3664230-3664291)
chr4 (18-51)||(33288421-33288454)
chr4 (365-452)||(782365-782453)
chr4 (21-69)||(26025527-26025575)
[»] scaffold0103 (1 HSPs)
scaffold0103 (18-69)||(44845-44896)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 67 - 517
Target Start/End: Original strand, 24234807 - 24235263
Alignment:
Q  67 tataaacatatatacgtggt-tttaaaaaattgcatgaatcttactcatcttctggagttctgtcccagatcgaggactagtgaactagttatatccaaa 165  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  24234807 tataaacatatatacgtggactttaaaaaattacatgaatcttactcatcttctggagttctgtcccaaatcgaggactagtgaactagttatatccaag 24234906  T
Q  166 catttcctagtagatgtagacatgatcctaaaacataagaggctatatttgcgcaaaaccaagagacacgaacttggtaactttggacatacatggctca 265  Q
    |||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24234907 catttcttcgtagatgtagacatgatcctaaaatacaagaggctatatttgcgcaaaactaagagacacgaacttggtaactttggacatacatggctca 24235006  T
Q  266 attgttgagatgcataagagctaaacaaaggggcccttgtcgatcatgtatataaattatggctattattttttgcatcct-atgagtttgtcgtg-ttt 363  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||   | | | |||||||| |||||   |    
T  24235007 attgttgaaatgcataagagctaaacaaaggggcccttgtcgatcatgtatataaattatggctattgcttttcaaaacttaatgagtttctcgtgcgct 24235106  T
Q  364 ttattcagattctaaaatcataaaaa-ttttaacgtgtttttgaggttttatgaagtgtttatgcagttcagattatataattcgaactg--nnnnnnnn 460  Q
     ||||| |||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||              
T  24235107 ctattcggattctaaaatcctaaaaagttttaacgtgtttctgaggttttatgaagtgtttatgcagttcggattttataatccgaactgaaaaaaaaat 24235206  T
Q  461 tcatagattataggtcatatcaactgcaaagggttctaaacactcacatcacctttg 517  Q
     |||| ||||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  24235207 acataaattatagatcatatcaactgcaaagggttcaaaacactcacgtcacctttg 24235263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29875181 - 29875233
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29875181 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtata 29875233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 23090525 - 23090580
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataaac 73  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23090525 aaaacttgtgtcaagaggtaaaacatcaaaagaaaaggaatggagggagtataaac 23090580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 12398996 - 12398946
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12398996 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 12398946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 34208765 - 34208819
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataaa 72  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34208765 aaaacttgtgtcaagagctaaaacatcaaaaaaaaaggaatggagggagtataaa 34208819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 42757855 - 42757805
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42757855 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 42757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 4695212 - 4695162
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  4695212 aaaacttgtgtcaagagctataacatcaaaagaaaagaaatggagggagta 4695162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 4145921 - 4145965
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggag 62  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  4145921 aaaacttgtgtcaagaactaaaacatcaaaagaaaaggaatggag 4145965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 42793562 - 42793597
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  42793562 ctaaaacatcaaaagaaaaggaatggagggagtata 42793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 22645959 - 22645909
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||| ||||||||||||||| |||||||||| ||| |||||||||    
T  22645959 aaaacttgtgccaagagctaaaacattaaaagaaaagaaattgagggagta 22645909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 365 - 445
Target Start/End: Original strand, 333421 - 333502
Alignment:
Q  365 tattcagattctaaaatcataaaaattttaacgtgtttttgaggttt-tatgaagtgtttatgcagttcagattatataatt 445  Q
    ||||| |||| |||||||  ||| ||||||||||||||| |  |||| ||||| |||||||||| |||||||||||||||||    
T  333421 tattcggattttaaaatcgaaaatattttaacgtgttttgggagtttctatgaggtgtttatgctgttcagattatataatt 333502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 12399190 - 12399223
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  12399190 ctaaaacatcaaaagaaaaggaatggagggagta 12399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 23090331 - 23090298
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  23090331 ctaaaacatcaaaagaaaaggaatggagggagta 23090298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 34208571 - 34208538
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  34208571 ctaaaacatcaaaagaaaaggaatggagggagta 34208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 41610405 - 41610372
Alignment:
Q  36 taaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||||||||||||||||||    
T  41610405 taaaacatcaaaagaaaaggaatggagggagtat 41610372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 3077630 - 3077596
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||| |||||||||||||||    
T  3077630 ctaaaacatcaaaagaaaatgaatggagggagtat 3077596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 4145727 - 4145694
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||| |||||    
T  4145727 ctaaaacatcaaaagaaaaggaatggagcgagta 4145694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 29874987 - 29874954
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||| ||||||||||||||    
T  29874987 ctaaaacatcaaaagaaaaagaatggagggagta 29874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 42793073 - 42793040
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||| |||||    
T  42793073 ctaaaacatcaaaagaaaaggaatggagtgagta 42793040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 452
Target Start/End: Complemental strand, 13169796 - 13169708
Alignment:
Q  365 tattcagattctaaaatcataaaaattttaacgtgtttttgagg-ttttatgaagtgtttatgcagttcagattatataattcgaactg 452  Q
    ||||||||||| ||||||  ||| ||||| |||| |||| |||| ||||||| |||||| |||  |||| |||||||||| ||||||||    
T  13169796 tattcagattcaaaaatctaaaatattttgacgtattttggaggtttttatggagtgttgatgtcgttcggattatataactcgaactg 13169708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 39518634 - 39518687
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39518634 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataa 39518687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 41349421 - 41349369
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41349421 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtata 41349369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29014740 - 29014689
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29014740 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 29014689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 36737884 - 36737833
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36737884 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 36737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 1352046 - 1351996
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1352046 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 1351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 18997194 - 18997244
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997194 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 18999733 - 18999783
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18999733 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 32677527 - 32677477
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32677527 aaaacttgtgtcaagagctaaaacatcaaaagaaaatgaatggagggagta 32677477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 39528976 - 39529026
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39528976 aaaacttgtgtcaaaagctaaaacatcaaaagaaaaggaatggagggagta 39529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 39807029 - 39806979
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39807029 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatgaagggagta 39806979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 38855544 - 38855595
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  38855544 aaaacttgtgccaatagctaaaacatcaaaagaaaaggaatggagggagtat 38855595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 29371588 - 29371538
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  29371588 aaaatttgtgtcaagagctaaaacatcaaaagaaaatgaatggagggagta 29371538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 32840176 - 32840226
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  32840176 aaaacttgtgtcaagagctaaaatatcaaaagaaaatgaatggagggagta 32840226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 22157485 - 22157534
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagt 67  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  22157485 aaaacttgtgtcaagagctaaaacatcaaaagaaaataaatggagggagt 22157534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Original strand, 29371782 - 29371820
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtataaac 73  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29371782 ctaaaacatcaaaagaaaaggaatggagggagtataaac 29371820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 21974376 - 21974425
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagt 67  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  21974376 aaaacttgtgtcaagagttaaaacatcaaaagaaaataaatggagggagt 21974425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 21996807 - 21996856
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagt 67  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  21996807 aaaacttgtgtcaagagttaaaacatcaaaagaaaataaatggagggagt 21996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 1352240 - 1352274
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  1352240 ctaaaacatcaaaagaaaaggaatggagggagtat 1352274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 55365941 - 55365903
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtataaac 73  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  55365941 ctaaaacatcaaaagaaaaggaatgaagggagtataaac 55365903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 18997000 - 18996967
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  18997000 ctaaaacatcaaaagaaaaggaatggagggagta 18996967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 18999539 - 18999506
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  18999539 ctaaaacatcaaaagaaaaggaatggagggagta 18999506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 32677721 - 32677754
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  32677721 ctaaaacatcaaaagaaaaggaatggagggagta 32677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 39528782 - 39528749
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  39528782 ctaaaacatcaaaagaaaaggaatggagggagta 39528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 41349615 - 41349648
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  41349615 ctaaaacatcaaaagaaaaggaatggagggagta 41349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 14338933 - 14339004
Alignment:
Q  365 tattcagattctaaaatcataaaaattttaacgtgtttttgaggttttatgaagtgtttatgcagttcagatt 437  Q
    |||||||||||| |||||  ||| |||| |||||||||| |||||||||| | || |||||||||||||||||    
T  14338933 tattcagattcttaaatccaaaatatttcaacgtgtttt-gaggttttataaggtatttatgcagttcagatt 14339004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 46878980 - 46879012
Alignment:
Q  36 taaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||    
T  46878980 taaaacatcaaaagaaaaggaatggagggagta 46879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 28228469 - 28228436
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||| |||||    
T  28228469 ctaaaacatcaaaagaaaaggaatggagagagta 28228436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 39807223 - 39807256
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  39807223 ctaaaacatcaaaagaaaaggaatggaggaagta 39807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 49319380 - 49319347
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||| ||||    
T  49319380 ctaaaacatcaaaagaaaaggaatggaggaagta 49319347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 28228665 - 28228701
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaag 54  Q
    |||||||||||||||||| |||||||||||| |||||    
T  28228665 aaaacttgtgtcaagagccaaaacatcaaaaaaaaag 28228701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 46220486 - 46220537
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46220486 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 46220537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 47669346 - 47669396
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47669346 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 1236120 - 1236071
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagt 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1236120 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagt 1236071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 9831730 - 9831777
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggaggga 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9831730 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggaggga 9831777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 10737751 - 10737700
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10737751 aaaacttgtatcaagagctaaaacatcaaaagaaaaggaatggagggagtat 10737700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 8889670 - 8889720
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8889670 aaaacttgtgtcaagagctaaaacatcaaaataaaaggaatggagggagta 8889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 3384645 - 3384597
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggag 66  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3384645 aaaacttgtgtcaagagctaaaacatcaaaagaaaaagaatggagggag 3384597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 48565044 - 48565095
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  48565044 aaaacttgtgtcaaaagccaaaacatcaaaagaaaaggaatggagggagtat 48565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 37875774 - 37875726
Alignment:
Q  21 acttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  37875774 acttgtgccaagagctaaaacatcaaaagaaaagaaatggagggagtat 37875726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 4817302 - 4817266
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtataa 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  4817302 ctaaaacatcaaaagaaaaggaatggagggagtataa 4817266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 4055517 - 4055483
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  4055517 ctaaaacatcaaaagaaaaggaatggagggagtat 4055483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4055711 - 4055761
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||| |||||||||||||||||| ||| | ||||||||    
T  4055711 aaaacttgtgtcaagagttaaaacatcaaaagaaaaagaacgaagggagta 4055761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 39241387 - 39241429
Alignment:
Q  26 tgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  39241387 tgtcaagagctaaaacatcaaaagaaaagaaatggagagagta 39241429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 47669152 - 47669118
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  47669152 ctaaaacatcaaaagaaaaggaatggagggagtat 47669118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 9831536 - 9831503
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  9831536 ctaaaacatcaaaagaaaaggaatggagggagta 9831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 18126884 - 18126851
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  18126884 ctaaaacatcaaaagaaaaggaatggagggagta 18126851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 33020239 - 33020206
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  33020239 ctaaaacatcaaaagaaaaggaatggagggagta 33020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 33023428 - 33023465
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtataaa 72  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  33023428 ctaaaacgtcaaaagaaaaggaatggagggagtataaa 33023465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 18127077 - 18127112
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaa 53  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18127077 aaaacttgtgtcaagagctaaaacatcaaaaaaaaa 18127112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 1236274 - 1236307
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||| ||||||||||||||    
T  1236274 ctaaaacatcaaaagaaaatgaatggagggagta 1236307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 46220292 - 46220259
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||| |||||||||    
T  46220292 ctaaaacatcaaaagaaaaggaatagagggagta 46220259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 28379174 - 28379224
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28379174 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 33837779 - 33837729
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33837779 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 33837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 45334326 - 45334276
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45334326 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 45334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 9740213 - 9740263
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9740213 aaaacttgtgtcaagagttaaaacatcaaaagaaaaggaatggagggagta 9740263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 25106438 - 25106488
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25106438 aaaacttgtgtcaaaagctaaaacatcaaaagaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 13469558 - 13469507
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  13469558 aaaacttgtgtcaagagttaaaacatcaaaagaaaaggaatggaaggagtat 13469507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 38495522 - 38495472
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  38495522 aaaacttatgtcaagagctaaaacatcaaaagaaaatgaatggagggagta 38495472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2508846 - 2508796
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  2508846 aaaacttgtgtcaagagctaaaacatcaaaagaaaagaaattgatggagta 2508796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 2626288 - 2626253
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaa 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  2626288 aaaacttgtgtcaagagctaaaacatcaaaagaaaa 2626253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 27027655 - 27027690
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  27027655 ctaaaacatcaaaagaaaaggaatggagggagtata 27027690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 9740018 - 9739984
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  9740018 ctaaaacatcaaaagaaaaggaatggagggagtat 9739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 27024466 - 27024432
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  27024466 ctaaaacatcaaaagaaaaggaatggagggagtat 27024432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 33837973 - 33838007
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  33837973 ctaaaacatcaaaagaaaaggaatggagggagtat 33838007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 2509040 - 2509073
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  2509040 ctaaaacatcaaaagaaaaggaatggagggagta 2509073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 32183528 - 32183479
Alignment:
Q  21 acttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    ||||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  32183528 acttgtgccaagagctaaaacatcaaaagataaaaaatggagggagtata 32183479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 45334520 - 45334553
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  45334520 ctaaaacatcaaaagaaaaggaatggagggagta 45334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 25106244 - 25106209
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    |||||||||||||||||||||||||||| |||||||    
T  25106244 ctaaaacatcaaaagaaaaggaatggagagagtata 25106209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 25979003 - 25979037
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  25979003 ctaaaacatcaaaagaaaagaaatggagggagtat 25979037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 25978751 - 25978714
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtataaa 72  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  25978751 ctaaaacatcaaaagaaaagaaatggaggtagtataaa 25978714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 13469749 - 13469777
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagg 63  Q
    |||||||||||||||||||||||||||||    
T  13469749 ctaaaacatcaaaagaaaaggaatggagg 13469777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17904390 - 17904440
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17904390 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 17904440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 37179381 - 37179331
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179381 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 37179331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29890876 - 29890825
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29890876 aaaacttgtgtcaaaagctaaaacatcaaaagaaaaggaatggagggagtat 29890825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 6387742 - 6387692
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6387742 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggaggaagta 6387692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 46467385 - 46467331
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataaa 72  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46467385 aaaatttgtgtcaagagttaaaacatcaaaagaaaaggaatggagggagtataaa 46467331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4405336 - 4405387
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  4405336 aaaacttgtgccaatagctaaaacatcaaaagaaaaggaatggagggagtat 4405387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 26770406 - 26770460
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataaa 72  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  26770406 aaaacttgtgtcaagaattaaaacatcaaaagaaaatgaatggagggagtataaa 26770460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 9332548 - 9332601
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataa 71  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  9332548 aaaacttgtgttaagagctaaaatatcaaaagaaaagaaatggagggagtataa 9332601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 6389951 - 6390002
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||||||||    
T  6389951 aaaacttgtgtcaagagttaaaacatcaaaagaaaaagaattgagggagtat 6390002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 31502702 - 31502649
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtataaa 72  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  31502702 aaaacttgcatcaagagctaaaacatcaaaagaaaa-gaatggagggagtataaa 31502649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 29427214 - 29427170
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggag 62  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  29427214 aaaacttgtgtcaagaggtaaaacatcaaaagaaaatgaatggag 29427170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 29427408 - 29427442
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  29427408 ctaaaacatcaaaagaaaaggaatggagggagtat 29427442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 43701584 - 43701550
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  43701584 ctaaaacatcaaaagaaaaggaatggagggagtat 43701550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 6387936 - 6387969
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  6387936 ctaaaacatcaaaagaaaaggaatggagggagta 6387969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 17904196 - 17904163
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  17904196 ctaaaacatcaaaagaaaaggaatggagggagta 17904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 26770212 - 26770179
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  26770212 ctaaaacatcaaaagaaaaggaatggagggagta 26770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 29723381 - 29723414
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  29723381 ctaaaacatcaaaagaaaaggaatggagggagta 29723414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 37179575 - 37179608
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  37179575 ctaaaacatcaaaagaaaaggaatggagggagta 37179608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 46467579 - 46467612
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  46467579 ctaaaacatcaaaagaaaaggaatggagggagta 46467612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 450
Target Start/End: Complemental strand, 16377966 - 16377879
Alignment:
Q  364 ttattcagattctaaaatcataaaa-attttaacgtgtttttgagg-ttttatgaagtgtttatgcagttcagattatataattcgaac 450  Q
    ||||| ||||| |||||| |||||| ||||| |||||||||||||| |||||||| |||||||||| ||| | |||||||||| |||||    
T  16377966 ttatttagattttaaaat-ataaaatatttttacgtgtttttgaggtttttatgaggtgtttatgcggtttaaattatataatccgaac 16377879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 29891071 - 29891103
Alignment:
Q  36 taaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||    
T  29891071 taaaacatcaaaagaaaaggaatggagggagta 29891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 4405141 - 4405106
Alignment:
Q  36 taaaacatcaaaagaaaaggaatggagggagtataa 71  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4405141 taaaacatcaaaagaaaagaaatggagggagtataa 4405106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 19523843 - 19523813
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaa 48  Q
    |||||||||||||||||||||||||||||||    
T  19523843 aaaacttgtgtcaagagctaaaacatcaaaa 19523813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 33379211 - 33379244
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||| |||||||||||||    
T  33379211 ctaaaacatcaaaagaaaagaaatggagggagta 33379244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 46690095 - 46690140
Alignment:
Q  23 ttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||| |||||||||||||||||||||| ||  |||||||||||||    
T  46690095 ttgtgccaagagctaaaacatcaaaagataaaaaatggagggagta 46690140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 22753115 - 22753067
Alignment:
Q  21 acttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||| ||| |||||||||||||| | ||| ||||||||||||||    
T  22753115 acttgtgtccagaactaaaacatcaaaatataagaaatggagggagtat 22753067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 8504783 - 8504733
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8504783 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2543308 - 2543359
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2543308 aaaacttgtgtcaagagctaaaacatcaaaagaaaacgaatggagggagtat 2543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 32274661 - 32274711
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32274661 aaaacttgtgtcaagagctaaaacatcaaaagaaaatgaatggagggagta 32274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 27312165 - 27312113
Alignment:
Q  18 aaaacttgtgtc-aagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27312165 aaaacttgtgtctaagagctaaaacatcaaaagaaaaggaatggagggagtat 27312113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 5008358 - 5008409
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||| |||||||||||||||||||||||||||||| | |||||||    
T  5008358 aaaacttgtgttaagagctaaaacatcaaaagaaaaggaatgaaaggagtat 5008409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 18742176 - 18742223
Alignment:
Q  21 acttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  18742176 acttgtgccaagaggtaaaacatcaaaagaaaagaaatggagggagta 18742223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 27312360 - 27312394
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  27312360 ctaaaacatcaaaagaaaaggaatggagggagtat 27312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 32274467 - 32274433
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  32274467 ctaaaacatcaaaagaaaaggaatggagggagtat 32274433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 29302515 - 29302548
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  29302515 ctaaaacatcaaaagaaaaggaatggagggagta 29302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 12174733 - 12174697
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtataa 71  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12174733 ctaaaacattaaaagaaaaggaatggagggagtataa 12174697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 7156287 - 7156236
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||| |||||||||||||||||||||| |||| || |||||| ||||    
T  7156287 aaaacttgtatcaagagctaaaacatcaaaagcaaagaaacggagggggtat 7156236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 7156469 - 7156503
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||| ||||||||||||||    
T  7156469 ctaaaacatcaaaagaaaagaaatggagggagtat 7156503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 29452592 - 29452542
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||| |||||| ||||||||||||||||||  ||| |||||||||    
T  29452592 aaaacttgtgccaagagttaaaacatcaaaagaaaataaatagagggagta 29452542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 18741980 - 18741947
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||| |||||||||||||    
T  18741980 ctaaaacatcaaaagaaaagaaatggagggagta 18741947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 15233982 - 15234032
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15233982 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 41252643 - 41252693
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  41252643 aaaacttgtgtcaagagctaaaacatcaaaagaaaatgaatggagagagta 41252693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 43040899 - 43040849
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  43040899 aaaacttgtgccaatagctaaaacatcaaaagaaaaggaatggagggagta 43040849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 44104596 - 44104546
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||| |||||| || |||||||||||||||||||||||||||||||||    
T  44104596 aaaacttatgtcaaaagttaaaacatcaaaagaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 10112372 - 10112337
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  10112372 ctaaaacatcaaaagaaaaggaatggagggagtata 10112337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 35792957 - 35792911
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggaggg 64  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  35792957 aaaacttatgtcaagagttaaaacatcaaaagaaaaggaatgaaggg 35792911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 43041094 - 43041128
Alignment:
Q  36 taaaacatcaaaagaaaaggaatggagggagtata 70  Q
    |||||||||||||||||||||||||||||||||||    
T  43041094 taaaacatcaaaagaaaaggaatggagggagtata 43041128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 35793150 - 35793184
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||| |||||||||||||||    
T  35793150 ctaaaacatcaaaagaaaaagaatggagggagtat 35793184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 444
Target Start/End: Original strand, 37267751 - 37267825
Alignment:
Q  371 gattctaaaatcataaaaattttaacgtgtttt-tgaggttttatgaagtgtttatgcagttcagattatataat 444  Q
    ||||||||||||  ||| |||||||||||||||  ||||||||||||  | ||||| ||||||||||| ||||||    
T  37267751 gattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttatacagttcagattctataat 37267825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 41252448 - 41252414
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||| |||||||||||||||||||||||||    
T  41252448 ctaaaacataaaaagaaaaggaatggagggagtat 41252414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 10118696 - 10118729
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    |||||| |||||||||||||||||||||||||||    
T  10118696 ctaaaatatcaaaagaaaaggaatggagggagta 10118729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 44104800 - 44104833
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||| ||||||||||    
T  44104800 ctaaaacatcaaaagaaaaggaacggagggagta 44104833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 8955826 - 8955779
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggaggga 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8955826 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggaggga 8955779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 39482089 - 39482138
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagt 67  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39482089 aaaacttgtgtcaagagctaaaacatcaaaagaaaagaaatggagggagt 39482138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 45590971 - 45591019
Alignment:
Q  20 aacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  45590971 aacttatgtcaagagctaaaacatcaaaagaaaatgaatggagggagta 45591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 49162315 - 49162367
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  49162315 aaaacttgtgccaatagctaaaacatcaaaagaaagggaatggagggagtata 49162367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 30469263 - 30469213
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  30469263 aaaacttgtgtcaagagttaaaacatcaaaagaaaagaaatgaagggagta 30469213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 36971275 - 36971319
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggag 62  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  36971275 aaaacttgtgtcaaaagctaaaacatcaaaagaaaatgaatggag 36971319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 19256219 - 19256185
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  19256219 ctaaaacatcaaaagaaaaggaatggagggagtat 19256185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 36016312 - 36016278
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||    
T  36016312 ctaaaacatcaaaagaaaaggaatggagggagtat 36016278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 19257104 - 19257137
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagta 68  Q
    ||||||||||||||||||||||||||||||||||    
T  19257104 ctaaaacatcaaaagaaaaggaatggagggagta 19257137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 8956020 - 8956055
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    |||||||||||||| |||||||||||||||||||||    
T  8956020 ctaaaacatcaaaaaaaaaggaatggagggagtata 8956055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 45590775 - 45590740
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtata 70  Q
    ||||||||||||||||||| ||||||||||||||||    
T  45590775 ctaaaacatcaaaagaaaatgaatggagggagtata 45590740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 30469412 - 30469446
Alignment:
Q  35 ctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||||||||||||||||||||| |||||||||    
T  30469412 ctaaaacatcaaaagaaaaggaatgaagggagtat 30469446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 432
Target Start/End: Original strand, 3664230 - 3664291
Alignment:
Q  372 attctaaaatcataaaaattttaacgtgtttttg-aggttttatgaagtgtttatgcagttc 432  Q
    |||||||||||  ||| ||||||||||||||||| |||||||||||  | ||||||||||||    
T  3664230 attctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttttatgcagttc 3664291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 33288454 - 33288421
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaa 51  Q
    |||||||||||||| |||||||||||||||||||    
T  33288454 aaaacttgtgtcaatagctaaaacatcaaaagaa 33288421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 452
Target Start/End: Complemental strand, 782453 - 782365
Alignment:
Q  365 tattcagattctaaaatcataaaaattttaacgtgtttttg-aggttttatgaagtgtttatgcagttcagattatataattcgaactg 452  Q
    ||||| ||||||||||||  ||| |||| ||| | |||||| || |||||||| || |||||||||||| |||| || |||||||||||    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttggagattttatgaggtttttatgcagttcggattctaaaattcgaactg 782365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 26025575 - 26025527
Alignment:
Q  21 acttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    ||||||| |||||||||||||||||||||| ||  || |||||||||||    
T  26025575 acttgtgccaagagctaaaacatcaaaagataaaaaacggagggagtat 26025527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 44845 - 44896
Alignment:
Q  18 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatggagggagtat 69  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  44845 aaaacttgtgtcaagagctaaaacatcaaaagaaaaggaatgtagagagtat 44896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University