View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_11 (Length: 494)
Name: NF20469_high_11
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Complemental strand, 33422138 - 33421672
Alignment:
| Q |
15 |
cagagactgtatcagctaggagcacaaaaaatggtttttcacggacttggtccactcggttgtattccatcacaaagagttaaatccaaacgcggccaat |
114 |
Q |
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| T |
33422138 |
cagagactgtatcagctaggagcacaaaaaatggtttttcacggacttggtccactcggttgtattccatcacaaagagttaaatccaaacgcggccaat |
33422039 |
T |
|
| Q |
115 |
gtctaaagcaagttaatgaatggattcaacaattcaactctaaagtacagaagctaatcatcaaactaaaccacggttttccaaatgcaaaacttgtctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
33422038 |
gtctaaagcaagttaatgaatggattcaacaattcaactctaaagtacagaagctaatcatcaaactaaaccgcggtcttccaaatgcaaaacttgtctt |
33421939 |
T |
|
| Q |
215 |
tgcagacacctatcctttagttctcgacttaatcaataatccatcaacttatggtaaaatttccattttaagccttacattatgctcaagattatttaat |
314 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33421938 |
tgcagacacctatcctttagttctcgacttaatcgataatccatctacttatggtaaaatttccattttaagccttacattatgctcaagattatttaat |
33421839 |
T |
|
| Q |
315 |
tatattcaacaacaatgcactcatttttctattgctgtatttctacaggttttaaagtttcaaatacatcttgttgtaatgtagacacaagcattggagg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33421838 |
tatattcaacaacaatgcactcatttttctattgctgtatttctacaggttttaaagtttcaaatacatcttgttgtaatgtagacacaagcattggagg |
33421739 |
T |
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| Q |
415 |
tttatgcttgccaaactcaaagttatgcaaaaaccgcaatgaatatgtattttgggatgcatttcat |
481 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33421738 |
tttatgcttaccaaactcaaagttatgcaaaaaccgcaatgaatatgtattttgggatgcatttcat |
33421672 |
T |
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