View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_14 (Length: 456)
Name: NF20469_high_14
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 351
Target Start/End: Complemental strand, 35739210 - 35738884
Alignment:
| Q |
5 |
agcccaacatccatattcttgacaaccgtacgttgtctgaggaacatcaaaatatttctttatttcttcctaaagctaatagaagacaatgttgatggca |
104 |
Q |
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| T |
35739210 |
agcccaacattcatattcttgacaaccgtacgttgtctgaggaacatcaaaatatttctttatttcttcctaaagctaatagaagacaatgttgatggca |
35739111 |
T |
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| Q |
105 |
ttggcaacacgttgttttctacagtctcttctttctttacctcttccttcttactaataggcaatgctgatgccattgacaacacttcattttcaacctc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35739110 |
ttggcaacacgttgttttctacagtctcttctttctttacctcttccttcttactaataggcaatgctgatgccattgacaacacttcattttcaacctc |
35739011 |
T |
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| Q |
205 |
atcttcacttctttattttctatcttcatgatttcggcatggtatgagattatgtatgtcattcaagtgaagttg--gttgttttcatatgctacttgat |
302 |
Q |
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| T |
35739010 |
atcttcacttctttattttatatcttcatgatttcggc----------------------attgaagtgaagttgaagttgttttcatatgctagttgat |
35738933 |
T |
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| Q |
303 |
tttcccaatcaaactcaaacaacctaatatccatcattttgtaaacatt |
351 |
Q |
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| T |
35738932 |
tttcccaatcaaactcaaacaacctaatatccatcattttgtaaacatt |
35738884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 35738849 - 35738793
Alignment:
| Q |
388 |
tggttaagacgcagggttcaaagacatcatttgttattcagattcccttcaaacgat |
444 |
Q |
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| T |
35738849 |
tggttaagacgcagggttcaaagacatcatttgttattcagattcccttcaaacgat |
35738793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 43097152 - 43097193
Alignment:
| Q |
400 |
agggttcaaagacatcatttgttattcagattcccttcaaac |
441 |
Q |
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| T |
43097152 |
agggttcaaagacattatttgttattcatattcccttcaaac |
43097193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 51385187 - 51385065
Alignment:
| Q |
68 |
ttcttcctaaagctaatagaagacaatgttgatggcattggcaacacgttgttttctacagtctcttctttctttacctcttccttcttactaataggca |
167 |
Q |
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| T |
51385187 |
ttcttcctagagctaataggaggcaatgatgatggcattggaaacacttcattttccgct---tcttgtttcttcacctctt---tcttactaataggca |
51385094 |
T |
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| Q |
168 |
atgctgatgccattgacaacacttcattt |
196 |
Q |
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|| ||||||||||| |||||||| |||| |
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| T |
51385093 |
atattgatgccattggcaacacttaattt |
51385065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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