View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_19 (Length: 396)
Name: NF20469_high_19
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 149 - 381
Target Start/End: Complemental strand, 11177534 - 11177302
Alignment:
| Q |
149 |
caacattaaccttatcttcatcactagttgctaatgttatagcacccttgttatcttcatcttcatatttacaacccttgcgttgtttcccccataatgg |
248 |
Q |
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| T |
11177534 |
caacattaaccttatcatcaccactagtagctaatgttatagcacccttgttatcttcatcttcatatttaccacccttgcgttgtttcccccataatgg |
11177435 |
T |
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| Q |
249 |
accaaagaattcattactattattattgttattcaaactcgaacctgaacccgacgacttcttcggtcttcctctaccacgttgtggcactgcctcaatg |
348 |
Q |
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| T |
11177434 |
accaaagaattcattactattattattattattcaaactcgaacctgaacccgacgccttcttcggtctgcctctaccacgttgcggcactgcctcaatg |
11177335 |
T |
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| Q |
349 |
tcgcccccattcaaatttctcttcaatcctttg |
381 |
Q |
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| T |
11177334 |
tcgcccccattcaaatttctcttcaatcctttg |
11177302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 11177736 - 11177580
Alignment:
| Q |
1 |
aacaacaatacaacatttaaccccaatcctacgttaaacatcccttcttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177736 |
aacaacaatacaacatttaaccccaatcctatgttaaacatcccttcttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttc |
11177637 |
T |
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| Q |
101 |
actggttcctcactctcctcttcccattataat---catcctcataattttcaacat |
154 |
Q |
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| T |
11177636 |
actggttcctcactctcctcttcccattataatcatcatcctcataattttcaacat |
11177580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 4703298 - 4703392
Alignment:
| Q |
44 |
cttcttacaaacatgttagcttcatttcacattaacgattttaatgatctttctttcactgg-ttcctcactctcctcttcccattataatcatc |
137 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||||| ||||||||||||||||| |||||| |
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| T |
4703298 |
cttcttagaaacatgttagcttcatttcacattaacgattttagtgacctttctttcacgggtttcctcattctcctcttcccattatcatcatc |
4703392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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