View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_21 (Length: 389)
Name: NF20469_high_21
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 47428877 - 47428521
Alignment:
| Q |
16 |
atatataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaa |
115 |
Q |
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| T |
47428877 |
atatataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaa |
47428778 |
T |
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| Q |
116 |
aatgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaac-agattaaatctaacatatgaacaaaactatatctcttacg |
214 |
Q |
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| T |
47428777 |
aatgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaacaagattaaatctaacatatgaacaaaactatatctcttacg |
47428678 |
T |
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| Q |
215 |
cgtatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaagtcctattaaaccagtaagtagaattttggaaggtgaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47428677 |
cgtatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaaatcctattaaaccagtaagtagaattttggaaggtgaga |
47428578 |
T |
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| Q |
315 |
aggnnnnnnnntggggaaggcaagcaaatggattagaaaccttcttctagggaaaaa |
371 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47428577 |
aggaaaaaaaatggggaaggcaagcaaatggattagaaaccttcttctagggaaaaa |
47428521 |
T |
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