View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20469_high_22 (Length: 385)
Name: NF20469_high_22
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20469_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Original strand, 55895042 - 55895404
Alignment:
| Q |
8 |
aaaatctcccaatgcttcaaaccctttgaaaatgtttacaatgctaatgcttatggtaacataccctacaacgtggtggtagatattccagtaaaatctc |
107 |
Q |
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| T |
55895042 |
aaaatctcccaatgcttcaaaccctttgaaaacgtttacaatgctaatgcttatggtaacataccctacaacgtggtggtagatattccagtaaaatctc |
55895141 |
T |
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| Q |
108 |
aacttatggtctttgtttggcctcaaaaatagagcaaacacttgaagagttgccaaggttacaagaacaatagcaagtgctctatgagtgtcgtatgtaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55895142 |
aacttatggtctttgtttggcctcaaaaatagagcaaacacttgaagagttgccaaggttacaagaacaatagcaagtgctctatgagtgtcgtatgtaa |
55895241 |
T |
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| Q |
208 |
tacccactgaatcactaccgagtttgagaccagtaccaaaaccagataatccaactatgtaggcagatacttgacaagttatgtgaagatagaaccaagc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
55895242 |
tacccactgaatcactaccgagtttgagaccagtaccaaaaccagataatccaactatgtaggcagagacttgacaagttatgtgaagatagaaccaagc |
55895341 |
T |
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| Q |
308 |
agggtctgcagatttgaacaccttcaaataccttgctattactgctcccgttggcatcaagat |
370 |
Q |
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| T |
55895342 |
agggtctgcagatttgaacaccttcaaataccttgctattactgctcccgttggcatcaagat |
55895404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Complemental strand, 1029884 - 1029522
Alignment:
| Q |
8 |
aaaatctcccaatgcttcaaaccctttgaaaatgtttacaatgctaatgcttatggtaacataccctacaacgtggtggtagatattccagtaaaatctc |
107 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029884 |
aaaatctcccaacgcttcaaaccctttgaaaacgtttacaatgctaatgcttatggtaacataccctacaacgtggtggtagatattccagtaaaatctc |
1029785 |
T |
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| Q |
108 |
aacttatggtctttgtttggcctcaaaaatagagcaaacacttgaagagttgccaaggttacaagaacaatagcaagtgctctatgagtgtcgtatgtaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029784 |
aacttatggtctttgtttggcctcaaaaatagagcaaacacttgaagagttgccaaggttacaagaacaatagcaagtgctctatgagtgtcgtatgtaa |
1029685 |
T |
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| Q |
208 |
tacccactgaatcactaccgagtttgagaccagtaccaaaaccagataatccaactatgtaggcagatacttgacaagttatgtgaagatagaaccaagc |
307 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1029684 |
taccctctgaatcactaccgagtttgagaccagtaccaaaaccagataatccaactatgtaggcagagacttgacaagttatgtgaagatagaaccaagc |
1029585 |
T |
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| Q |
308 |
agggtctgcagatttgaacaccttcaaataccttgctattactgctcccgttggcatcaagat |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1029584 |
agggtctgcagatttgaacaccttcaaataccttgctattactgctcccgttggcatcaagat |
1029522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 9412796 - 9412875
Alignment:
| Q |
291 |
tgaagatagaaccaagcagggtctgcagatttgaacaccttcaaataccttgctattactgctcccgttggcatcaagat |
370 |
Q |
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||||| || |||||||||||||||||||| ||||| |||||||| |||||||| || || |||||| ||||||||||| |
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| T |
9412796 |
tgaaggtaaaaccaagcagggtctgcagacttgaaaaccttcaagtaccttgcaatcacagctcccaagggcatcaagat |
9412875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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