View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20469_high_28 (Length: 367)

Name: NF20469_high_28
Description: NF20469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20469_high_28
NF20469_high_28
[»] chr1 (15 HSPs)
chr1 (1-367)||(28326151-28326517)
chr1 (1-359)||(21159033-21159387)
chr1 (61-201)||(28239071-28239208)
chr1 (284-349)||(28231356-28231421)
chr1 (62-201)||(47569161-47569297)
chr1 (284-359)||(47569003-47569078)
chr1 (61-228)||(14508760-14508918)
chr1 (33-201)||(28231498-28231663)
chr1 (35-111)||(6326673-6326749)
chr1 (153-201)||(6326788-6326836)
chr1 (62-107)||(4872625-4872670)
chr1 (61-106)||(12535422-12535467)
chr1 (153-201)||(677215-677263)
chr1 (153-220)||(671027-671091)
chr1 (61-106)||(12532944-12532989)
[»] chr5 (3 HSPs)
chr5 (153-201)||(1717891-1717939)
chr5 (61-118)||(1717968-1718025)
chr5 (339-367)||(2657685-2657713)
[»] chr2 (2 HSPs)
chr2 (61-118)||(9066367-9066424)
chr2 (66-115)||(9068553-9068602)
[»] chr3 (1 HSPs)
chr3 (65-118)||(47924865-47924918)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 28326517 - 28326151
Alignment:
Q  1 tgctatagtaagaagacatggacggatgtttattgatgccttgaactctttaaataaacgaattgcttgtttaaattgaccgatgatacaatagccaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326517 tgctatagtaagaagacatggacggatgtttattgatgccttgaactctttaaataaacgaattgcttgtttaaattgaccgatgatacaatagccaaag 28326418  T
Q  101 attagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcagaatataaatcataagcttggtttataagtctatctttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326417 attagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcagaatataaatcataagcttggtttataagtctatctttgc 28326318  T
Q  201 aagctagcctgaatatgattgtgttataacagcgcatgacagtaaaaccatcaagactttccgtgtcaatctcaatctgtaaagcctttctcaacaactg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326317 aagctagcctgaatatgattgtgttataacagcgcatgacagtaaaagcatgaagactttccgtgtcaatctcaatctgtaaagcctttctcaacaactg 28326218  T
Q  301 gatggctgattgagtttctcctatccgacataatccagtgattagaataagataactatgatagttc 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326217 gatggctgattgagtttctcctatccgacataatccagtgattagaataagataactatgatagttc 28326151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 21159033 - 21159387
Alignment:
Q  1 tgctatagtaagaagacatggacggatgtttattgatgccttgaactctttaaataaacgaattgcttgtttaaattgaccgatgatacaatagccaaag 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||| ||||||||| |||| || ||| ||||||| |||     
T  21159033 tgctaaagtaagaagacatggacggatgtttattgatgccttgaattctttaaagaaaccgattgattgtttaaactgactgacgatgcaatagcaaaa- 21159131  T
Q  101 attagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcagaatataaatcataagcttggtttataagtctatctttgc 200  Q
    | || ||||||||| ||||  |||||||||||||| |||||| |||||||    |||||||||||||||||||| |||||||||||||||||||||||||    
T  21159132 actaaatgatgatacgtgtcggaattaggtgagacgttgttaacatgaaga---atttcagaatataaatcataggcttggtttataagtctatctttgc 21159228  T
Q  201 aagctagcctgaatatgattgtgttataacagcgcatgacagtaaaaccatcaagactttccgtgtcaatctcaatctgtaaagcctttctcaacaactg 300  Q
    | |||||||||||||||| ||| |||||||||  | ||||||||||||||| |  | ||||| |||||||||||||||||||||||||||||||||||||    
T  21159229 aggctagcctgaatatgactgtattataacagaacgtgacagtaaaaccataaccattttccctgtcaatctcaatctgtaaagcctttctcaacaactg 21159328  T
Q  301 gatggctgattgagtttctcctatccgacataatccagtgattagaataagataactat 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21159329 gatggctgattgagtttctcctatccgacataatccagtgattagaataatataactat 21159387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 201
Target Start/End: Complemental strand, 28239208 - 28239071
Alignment:
Q  61 aattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttca 160  Q
    |||||| |||||||||||||||| ||| ||||| ||| ||| |||||||  |||||||  ||||| |||   ||  |||||| ||||||   ||||||||    
T  28239208 aattgcctgtttaaattgaccgaggatgcaataaccatagactagatgactatatgtgcaagaatcagggctgatgttgttaacatgaa---tcatttca 28239112  T
Q  161 gaatataaatcataagcttggtttataagtctatctttgca 201  Q
    ||||| |||||||| |||||||||| |||||||||||||||    
T  28239111 gaatacaaatcataggcttggtttacaagtctatctttgca 28239071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 28231421 - 28231356
Alignment:
Q  284 gcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaata 349  Q
    |||||||||||||||||||| |||| ||||||||||||||||  |||||||||| || ||||||||    
T  28231421 gcctttctcaacaactggattgctgtttgagtttctcctatctcacataatccattgcttagaata 28231356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 201
Target Start/End: Complemental strand, 47569297 - 47569161
Alignment:
Q  62 attgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcag 161  Q
    ||||||||||| |||||||| | ||| ||||| ||| || ||||||  |||||||||  | |||||||   ||  |||||| | ||||   |||||||||    
T  47569297 attgcttgtttgaattgacccaggatgcaataaccataggttagattttgatatgtggtataattaggctcgatgttgttaacgtgaa---tcatttcag 47569201  T
Q  162 aatataaatcataagcttggtttataagtctatctttgca 201  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  47569200 aatataaatcataggcttggtttacaagtctatctttgca 47569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 47569078 - 47569003
Alignment:
Q  284 gcctttctcaacaactggatggctgattgagtttctcctatccgacataatccagtgattagaataagataactat 359  Q
    |||| ||||||||  | ||||||| |||||||||||||||||  |||||||||| |||| ||||||||||||||||    
T  47569078 gcctgtctcaacatattgatggctaattgagtttctcctatctcacataatccattgatcagaataagataactat 47569003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 14508760 - 14508918
Alignment:
Q  61 aattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttca 160  Q
    ||||||||||||||||||||||| ||| ||||| ||| ||||||||| ||||||||||  || || |||   ||  || ||| ||       ||||||||    
T  14508760 aattgcttgtttaaattgaccgacgatgcaataaccatagattagattatgatatgtgatagcatcaggattgatcttcttaaca------atcatttca 14508853  T
Q  161 gaatataaatcataagcttggtttataagtctatctttgcaagctagcctgaatatgattgtgttata 228  Q
    |||||||||||||| |||||||||| | |||||||||||||   ||| |||||||||||  |||||||    
T  14508854 gaatataaatcataggcttggtttacacgtctatctttgca---tagtctgaatatgatattgttata 14508918  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 28231663 - 28231498
Alignment:
Q  33 ttgatgccttgaactctttaaataaacgaattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtga 132  Q
    ||||||||| ||| ||  |||| || |||| ||||| |||||||||||||| ||| ||||| ||| ||||||||||   |||||||||| ||  |||       
T  28231663 ttgatgcctcgaattcaataaagaagcgaagtgcttctttaaattgaccgaggatgcaataaccatagattagatgtctatatgtgtgacaaccaggctt 28231564  T
Q  133 gacattgttaccatgaagcttcatttcagaatataaatcataagcttggtttataagtctatctttgca 201  Q
    ||  |||||| ||| ||   |||||||||||||||| ||||| |||||||| | |||||||||||||||    
T  28231563 gatgttgttaacataaa---tcatttcagaatataattcataggcttggttaacaagtctatctttgca 28231498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 6326673 - 6326749
Alignment:
Q  35 gatgccttgaactctttaaataaacgaattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatg 111  Q
    ||||||||||| | |||||| ||   ||||||||||| ||||||||||| ||| ||||||||| |||||||||||||    
T  6326673 gatgccttgaattttttaaacaaggcaattgcttgttcaaattgaccgaggatgcaatagccatagattagatgatg 6326749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 6326788 - 6326836
Alignment:
Q  153 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 201  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||    
T  6326788 tcatttcagaatataaatcataggcttggtttgcaagtctatctttgca 6326836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 4872670 - 4872625
Alignment:
Q  62 attgcttgtttaaattgaccgatgatacaatagccaaagattagat 107  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||    
T  4872670 attgcttgtttaaattgaccgaggatgcaatagccatagattagat 4872625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 12535422 - 12535467
Alignment:
Q  61 aattgcttgtttaaattgaccgatgatacaatagccaaagattaga 106  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12535422 aattgcttgtttaaattgaccggtgatgcaatagccatagattaga 12535467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 677263 - 677215
Alignment:
Q  153 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 201  Q
    |||||||||||||||||||||| ||||| | || |||||||||||||||    
T  677263 tcatttcagaatataaatcataggcttgatgtacaagtctatctttgca 677215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 671027 - 671091
Alignment:
Q  153 tcatttcagaatataaatcataagcttggtttataagtctatctttgcaagctagcctgaatatgatt 220  Q
    |||||||| |||||||| ||||  ||||||||| |||||||||||||||    |||||||||||||||    
T  671027 tcatttcaaaatataaaccatagccttggtttacaagtctatctttgca---cagcctgaatatgatt 671091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 12532944 - 12532989
Alignment:
Q  61 aattgcttgtttaaattgaccgatgatacaatagccaaagattaga 106  Q
    |||||||||||||||||||||| ||||  |||||||| ||||||||    
T  12532944 aattgcttgtttaaattgaccgttgatgtaatagccatagattaga 12532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 1717939 - 1717891
Alignment:
Q  153 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 201  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1717939 tcatttcagaatataaatcataggcttggtttacaagtctatctttgca 1717891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 1718025 - 1717968
Alignment:
Q  61 aattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtg 118  Q
    ||||||||||||||||||||| | ||| ||||| ||| ||||||||| ||||||||||    
T  1718025 aattgcttgtttaaattgaccaacgatgcaataaccatagattagattatgatatgtg 1717968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 2657685 - 2657713
Alignment:
Q  339 tgattagaataagataactatgatagttc 367  Q
    |||||||||||||||||||||||||||||    
T  2657685 tgattagaataagataactatgatagttc 2657713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 9066424 - 9066367
Alignment:
Q  61 aattgcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtg 118  Q
    ||||||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||||||    
T  9066424 aattgctggtttaaattgaccgacgatacaataaccatagattagattatgatatgtg 9066367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 9068602 - 9068553
Alignment:
Q  66 cttgtttaaattgaccgatgatacaatagccaaagattagatgatgatat 115  Q
    |||||||||||||||| | ||| ||||||||| ||||||||| |||||||    
T  9068602 cttgtttaaattgaccaacgatgcaatagccatagattagattatgatat 9068553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 47924865 - 47924918
Alignment:
Q  65 gcttgtttaaattgaccgatgatacaatagccaaagattagatgatgatatgtg 118  Q
    ||||||||||||| ||||||||| |||||||||  |||||||| ||||||||||    
T  47924865 gcttgtttaaattcaccgatgatgcaatagccattgattagataatgatatgtg 47924918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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